View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7991_low_34 (Length: 316)

Name: NF7991_low_34
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7991_low_34
NF7991_low_34
[»] chr4 (2 HSPs)
chr4 (96-298)||(45070619-45070821)
chr4 (18-96)||(45071214-45071291)
[»] chr7 (4 HSPs)
chr7 (21-65)||(19849380-19849424)
chr7 (18-64)||(17756811-17756857)
chr7 (22-64)||(44945154-44945196)
chr7 (18-58)||(1075855-1075895)
[»] scaffold0001 (1 HSPs)
scaffold0001 (18-87)||(181707-181774)
[»] chr6 (1 HSPs)
chr6 (24-87)||(34884384-34884446)
[»] chr5 (1 HSPs)
chr5 (24-70)||(4428756-4428802)
[»] chr3 (1 HSPs)
chr3 (18-87)||(25644797-25644864)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 96 - 298
Target Start/End: Complemental strand, 45070821 - 45070619
Alignment:
Q  96 taaatcacaattaataacacaattctccaaggccaatgatatgcctccatatttccatctacatgatgaggtgcatgggatatataccattggggtccct 195  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45070821 taaatcataattaataacacaattctccaaggccaatgatatgcctccatatttccatctacatgatgaggtgcatgggatatataccattggggtccct 45070722  T
Q  196 tttactaacagtttatttgtgcttaaaaggaatgtattaactaactatataattgcttattgcaggaaaatggacatttctttcgaaatgtctagcactt 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45070721 tttactaacagtttatttgtgcttaaaaggaatgtattaactaactatataattgcttattgcaggaaaatggacatttctttcgaaatgtctagcactt 45070622  T
Q  296 aca 298  Q
    |||    
T  45070621 aca 45070619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 45071291 - 45071214
Alignment:
Q  18 tgcaacattgttaattggtgtggtggtaatattgcttgattgatacctaaggggatgttagttcgatacctactaggat 96  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||  ||||||| ||||| |||||||||||||||    
T  45071291 tgcaacattgttaactggtgtggtggtaatattgcttgattgata-cttgggggatgctagtttgatacctactaggat 45071214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 19849380 - 19849424
Alignment:
Q  21 aacattgttaattggtgtggtggtaatattgcttgattgatacct 65  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  19849380 aacattgttaactggtgtggtggtaatattgcttgattgatacct 19849424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 17756857 - 17756811
Alignment:
Q  18 tgcaacattgttaattggtgtggtggtaatattgcttgattgatacc 64  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  17756857 tgcatcattgttaactggtgtggtggtaatattgctagattgatacc 17756811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 44945196 - 44945154
Alignment:
Q  22 acattgttaattggtgtggtggtaatattgcttgattgatacc 64  Q
    |||||||||| | ||||||||||||||||||||||||||||||    
T  44945196 acattgttaactcgtgtggtggtaatattgcttgattgatacc 44945154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 1075855 - 1075895
Alignment:
Q  18 tgcaacattgttaattggtgtggtggtaatattgcttgatt 58  Q
    |||||||||||||| ||||||||||||||| |||| |||||    
T  1075855 tgcaacattgttaactggtgtggtggtaattttgcatgatt 1075895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 181774 - 181707
Alignment:
Q  18 tgcaacattgttaattggtgtggtggtaatattgcttgattgatacctaaggggatgttagttcgatacc 87  Q
    |||||||||||||||||||||||||||||| |||| ||||| || |||  ||||||| ||||||| ||||    
T  181774 tgcaacattgttaattggtgtggtggtaattttgcatgattaatgcct--ggggatgctagttcggtacc 181707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 34884384 - 34884446
Alignment:
Q  24 attgttaattggtgtggtggtaatattgcttgattgatacctaaggggatgttagttcgatacc 87  Q
    |||||||| |||||||||||||| |||||||| |||||| ||  ||||||| ||||||||||||    
T  34884384 attgttaactggtgtggtggtaaaattgcttgtttgata-cttgggggatgctagttcgatacc 34884446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 4428756 - 4428802
Alignment:
Q  24 attgttaattggtgtggtggtaatattgcttgattgatacctaaggg 70  Q
    |||||||| |||||||||||||| |||||||| ||||||||| ||||    
T  4428756 attgttaactggtgtggtggtaaaattgcttgtttgatacctgaggg 4428802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 25644864 - 25644797
Alignment:
Q  18 tgcaacattgttaattggtgtggtggtaatattgcttgattgatacctaaggggatgttagttcgatacc 87  Q
    |||||||||||||| ||||||||||||||| |||| ||||| || |  | ||||||| ||||||||||||    
T  25644864 tgcaacattgttaagtggtgtggtggtaattttgcatgattaatgc--atggggatgctagttcgatacc 25644797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University