View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_low_35 (Length: 310)
Name: NF7991_low_35
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 5401157 - 5400882
Alignment:
| Q |
19 |
caacaacctcatgtcctttgtggaaccaaatttgacacgaggagctggtttcttaagctgttcttagaattgaataaggacactacttgtacagttatgc |
118 |
Q |
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| T |
5401157 |
caacaacctcatgtcctttgtggaaccaaatttgacacgaggagctggtttcttaagctgttcttagaattgaataaggacactacttgtacagttatgc |
5401058 |
T |
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| Q |
119 |
acacacgatcacaaacatcttttacggtgaaaaaagcttaacttctcctcgattaggataactcaaaacccagattccccagcttaaagaaaacaactag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5401057 |
acacacgatcacaaacatcttttacggtgaaaaaagcttaacttctcctcgattaggataactcaaaacccagattccccagcttaaagaaaacaactag |
5400958 |
T |
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| Q |
219 |
aaccccactatatatagtaactttttggtttttgttaaaaaatgcactatcttactagaatcaatgctaggttcat |
294 |
Q |
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| T |
5400957 |
aaccccactatatatagtaactttttggtttttgttaaaaaatgcactatcttactagaatcaatgctaggttcat |
5400882 |
T |
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