View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_low_36 (Length: 299)
Name: NF7991_low_36
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 44750773 - 44750533
Alignment:
| Q |
9 |
atcatagatggaactttcaaattatagctagaactcttataaattggctcactatatatatttttatctcaaaacggttatatttttctgtgttgagtta |
108 |
Q |
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| T |
44750773 |
atcatagatggaactttcaaattatagctagaactcttataaattggctcactatatatatttttctctcaaaacggttatatttttctttgttgagtta |
44750674 |
T |
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| Q |
109 |
ggctcctacttcacttctgcttgcattaaatgcatcttgattgtcaaaaacattgacattaagcattgaatggagaaggatataatttctctttcaatgt |
208 |
Q |
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| T |
44750673 |
ggctcctacttcacttctgcttgcattaaatgcatcttgattgtcaaaaacattgacattaagcattgaatggagaaggatataatttatctttcaatgt |
44750574 |
T |
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| Q |
209 |
ttgcagtacagtttgaaaaatctgtaatagcctttccttat |
249 |
Q |
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| T |
44750573 |
ttgcagtacagtttgaaaaatctgtaatagcctttccttat |
44750533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 281
Target Start/End: Complemental strand, 44750541 - 44750510
Alignment:
| Q |
250 |
tttccttataacaacccatctagtgacgacaa |
281 |
Q |
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| T |
44750541 |
tttccttataacaacccatctagtgacgacaa |
44750510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 152 - 251
Target Start/End: Original strand, 43485867 - 43485968
Alignment:
| Q |
152 |
tcaaaaacattgacattaagcattgaat---ggagaaggatataatttctctttcaatgtttgcagtacagtttgaaaaatctgtaatagcctttcctta |
248 |
Q |
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| T |
43485867 |
tcaaaaacttcgaaattaagcattgaatagaggagaatgatttaatttctctttcaatgtttgcagtacagtttgaaaaa-ctgtattagcctttcctta |
43485965 |
T |
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| Q |
249 |
ttt |
251 |
Q |
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||| |
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| T |
43485966 |
ttt |
43485968 |
T |
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