View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7991_low_37 (Length: 298)
Name: NF7991_low_37
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_low_37 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 29504782 - 29504505
Alignment:
| Q |
18 |
gaaacctctaaaaccgttgcattgcggctgcaaatttgattgtagtccacaatttaaaaccatgcgacacacatttcttgcatttgtttgcttgatcggt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29504782 |
gaaacctctaaaaccgttgcattgcggctgcaaatttgattgtagtccacaatttaaaaccatgcgacacacatttcttgaatttgtttgcttgatcggt |
29504683 |
T |
|
| Q |
118 |
taaaatttcatcatttatgtatttgctaactcactacaggcatggacttgataagttagtatttaacatgttggatattttgtgaatccattgtgtctaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29504682 |
taaaatttcatcatttatgtatttgctaactcactacaggcatggacttgataagttagtatttaacatgttggatattttgtgaatccattgtgtctaa |
29504583 |
T |
|
| Q |
218 |
atcattagaaaataataaacctattttcattgttgttttaaaaagatggatgacttctaacctacgaacaccaaactc |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |
|
|
| T |
29504582 |
ttcattagaaaataataaacctattttcattgttgttttaaacagatggatgacttctaacctacaaaccgcaaactc |
29504505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 92 - 254
Target Start/End: Complemental strand, 29510123 - 29509957
Alignment:
| Q |
92 |
ttcttgcatttgtttgcttgatcggttaaaatttcatcatttat--gtatttgctaactcactacag--gcatggacttgataagttagtatttaacatg |
187 |
Q |
| |
|
|||||| ||||||| | |||||| |||||||||||||||||||| ||||||||||||| ||| ||| |||||||| ||||||||| |||||||||||| |
|
|
| T |
29510123 |
ttcttgaatttgttggtttgatcagttaaaatttcatcatttatatgtatttgctaactgactgcagtggcatggacatgataagttggtatttaacatg |
29510024 |
T |
|
| Q |
188 |
ttggatattttgtgaatccattgtgtctaaatcattagaaaataataaacctattttcattgttgtt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||| |
|
|
| T |
29510023 |
ttggatattttgtgaatccattgtgtctaatgcattagaaaagaataaacatattttcattgttgtt |
29509957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University