View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7991_low_44 (Length: 272)

Name: NF7991_low_44
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7991_low_44
NF7991_low_44
[»] chr3 (7 HSPs)
chr3 (1-272)||(54520729-54521000)
chr3 (9-214)||(12305102-12305318)
chr3 (1-173)||(29544826-29544978)
chr3 (209-272)||(3803127-3803190)
chr3 (209-272)||(11850384-11850447)
chr3 (229-270)||(23395821-23395862)
chr3 (1-62)||(38311802-38311863)
[»] chr4 (13 HSPs)
chr4 (1-272)||(49547758-49548029)
chr4 (1-226)||(14048531-14048755)
chr4 (1-226)||(15534121-15534359)
chr4 (1-173)||(36037864-36038048)
chr4 (110-179)||(33198527-33198596)
chr4 (139-226)||(14063197-14063281)
chr4 (229-272)||(6511822-6511865)
chr4 (1-78)||(16043038-16043113)
chr4 (108-162)||(33198565-33198619)
chr4 (229-270)||(2584972-2585013)
chr4 (235-272)||(13446700-13446737)
chr4 (189-230)||(27028037-27028078)
chr4 (236-272)||(21061774-21061810)
[»] chr7 (11 HSPs)
chr7 (1-226)||(16108673-16108919)
chr7 (1-226)||(11303187-11303425)
chr7 (1-106)||(29796681-29796786)
chr7 (1-106)||(29800500-29800605)
chr7 (1-106)||(23664937-23665042)
chr7 (110-179)||(46173782-46173851)
chr7 (229-272)||(3289583-3289626)
chr7 (189-220)||(14161645-14161676)
chr7 (189-230)||(43277529-43277571)
chr7 (1-62)||(10896730-10896791)
chr7 (1-62)||(15167242-15167303)
[»] chr2 (5 HSPs)
chr2 (1-226)||(20261159-20261397)
chr2 (1-106)||(10684749-10684854)
chr2 (1-62)||(6482795-6482856)
chr2 (1-62)||(6486262-6486323)
chr2 (189-230)||(27851879-27851920)
[»] chr6 (5 HSPs)
chr6 (1-214)||(12942155-12942379)
chr6 (209-272)||(5110504-5110567)
chr6 (209-272)||(5289863-5289926)
chr6 (1-43)||(28289319-28289361)
chr6 (189-228)||(31735632-31735671)
[»] chr5 (6 HSPs)
chr5 (113-226)||(37805042-37805157)
chr5 (1-106)||(9776431-9776536)
chr5 (1-82)||(37804887-37804968)
chr5 (209-272)||(41876290-41876353)
chr5 (108-184)||(42242247-42242323)
chr5 (1-62)||(22750221-22750282)
[»] scaffold1427 (1 HSPs)
scaffold1427 (1-106)||(1501-1606)
[»] scaffold0506 (1 HSPs)
scaffold0506 (108-226)||(8699-8817)
[»] chr8 (9 HSPs)
chr8 (110-184)||(29327668-29327742)
chr8 (122-226)||(21322046-21322150)
chr8 (122-226)||(21326634-21326738)
chr8 (189-230)||(17907678-17907719)
chr8 (8-44)||(22419439-22419475)
chr8 (1-44)||(35026880-35026923)
chr8 (1-59)||(2418891-2418949)
chr8 (9-62)||(8728672-8728725)
chr8 (108-157)||(29327716-29327765)
[»] chr1 (2 HSPs)
chr1 (108-226)||(19778232-19778350)
chr1 (229-272)||(18275163-18275206)
[»] scaffold0422 (1 HSPs)
scaffold0422 (1-82)||(3120-3201)
[»] scaffold0326 (1 HSPs)
scaffold0326 (209-272)||(113-176)
[»] scaffold1419 (1 HSPs)
scaffold1419 (1-58)||(67-124)
[»] scaffold0790 (1 HSPs)
scaffold0790 (1-70)||(6067-6136)
[»] scaffold0010 (1 HSPs)
scaffold0010 (189-224)||(127127-127162)
[»] scaffold0042 (1 HSPs)
scaffold0042 (189-230)||(28580-28620)
[»] scaffold0004 (1 HSPs)
scaffold0004 (229-270)||(59593-59634)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 54521000 - 54520729
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  54521000 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatgttgtggaaaatgttggt 54520901  T
Q  101 taatatattggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttggctggtgttggttaatg 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  54520900 taatatgttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttggttggtgttggttaatg 54520801  T
Q  201 tgaaatatatatattatgtggaaaatgtatattcttgtttatatcattcgagttgttgttattaacgttgct 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  54520800 tgaaatatatatattatgtggaaaatgtatattcttgtttatatcattcgagttgttattattaacgttgct 54520729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 12305318 - 12305102
Alignment:
Q  9 tgttatatcttgagattgtttgtgtgctgccatgttactagttattattgattaagatgcatctgttggttaatgttgtggaaaatattggttaatatat 108  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |  |||  |||||| | | | |  |    
T  12305318 tgttatattttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatatgttggttaatatttgattaaag-t 12305220  T
Q  109 tggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggct------------aatgttggctggtgttggtt 196  Q
     |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |            ||||||||||||||||||||    
T  12305219 gggttaatgtttaattaaagtgggttaacctttgattaaagttggttaatatttaggtgacgttggttaatgttgtgggaaatgttggctggtgttggtt 12305120  T
Q  197 aatgtgaaatatatatat 214  Q
    ||||||||||||||||||    
T  12305119 aatgtgaaatatatatat 12305102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 29544826 - 29544978
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    |||||||||||||| |||||||||||||        |||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| |||||    
T  29544826 tttgatgttgttatgtcttgagattgtt--------gccatgttactagttattattgattaggatgcatatgttggttaatgttgtgggaaatgttggt 29544917  T
Q  101 taatatattggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttg 173  Q
    |||||            ||| ||||||||||||||| |||| ||||||||||||||||||||| || ||||||    
T  29544918 taata------------tttgattaaagtgggttaatgtttaattaaagttggttaatatttaagtaacgttg 29544978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 209 - 272
Target Start/End: Complemental strand, 3803190 - 3803127
Alignment:
Q  209 atatattatgtggaaaatgtatattcttgtttatatcattcgagttgttgttattaacgttgct 272  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  3803190 atatattatgtggaaaatgtatattgttgtttatatcattcgagttgttattattaacgttgct 3803127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 11850384 - 11850447
Alignment:
Q  209 atatattatgtggaaaatgtatattcttgtttatatcattcgagttgttgttattaacgttgct 272  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||    
T  11850384 atatattatgtggaaaatgtatattgttgtttatatcattctagttgttattattaacgttgct 11850447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 23395821 - 23395862
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttg 270  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  23395821 atattgttgtttatatcattcgagttgttattattaacgttg 23395862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38311802 - 38311863
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgatta 62  Q
    |||||| |||||||||||| ||| |||||| ||||||||||||| |   |||||||||||||    
T  38311802 tttgatattgttatatcttaagaatgtttgagtgctgccatgttgccgtttattattgatta 38311863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 49547758 - 49548029
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||||    
T  49547758 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatcttttggttaatgtggtggaaaatgttggt 49547857  T
Q  101 taatatattggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttggctggtgttggttaatg 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49547858 taatatgttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttggttggtgttggttaatg 49547957  T
Q  201 tgaaatatatatattatgtggaaaatgtatattcttgtttatatcattcgagttgttgttattaacgttgct 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49547958 tgaaatatatatattatgtggaaaatgtatattcttgtttatatcattcgagttgttattattaacgttgct 49548029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 14048755 - 14048531
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||  |||||| |||||||| ||||| ||||||||||| |  |||  |||||| |     
T  14048755 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttgctgtttattaatgattaagctgcatatgttggttaatatgttggttaatatttga 14048656  T
Q  101 taatatattggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttggctggtgttggttaatg 200  Q
    | | |  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14048655 ttaaag-tgggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggttaatgttggctggtgttggttaatg 14048557  T
Q  201 tgaaatatatatattatgtggaaaat 226  Q
    |||||||||| |||||||||||||||    
T  14048556 tgaaatatatgtattatgtggaaaat 14048531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 15534359 - 15534121
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |  |||  |||||| |     
T  15534359 tttgatgttgttatattttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatatgttggttaatatttga 15534260  T
Q  101 taatatattggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggct------------aatgttggctgg 188  Q
    | | |  | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |            ||||||||||||    
T  15534259 tta-aagtgggttaatgtttaattaaagtgggttaacctttgattaaagttggttaatatttaggtgacgttggttaatgttgtgggaaatgttggctgg 15534161  T
Q  189 tgttggttaatgtgaa--atatatatattatgtggaaaat 226  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  15534160 tgttggttaatgtgaaatatatatatattatgtggaaaat 15534121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 36038048 - 36037864
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgattaagatgcatctgttggttaat------------gttgtg 88  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||  ||||||||||||||| ||||| |||||||||||            ||||||    
T  36038048 tttgatgttgttatatcttgagattgtttgtgtgctgccatgtcgctgtttattattgattaagctgcatatgttggttaatatattggctaatgttgtg 36037949  T
Q  89 gaaaatattggttaatatattggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttg 173  Q
    |  ||| ||||||||||  ||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||    
T  36037948 ggtaatgttggttaataagttggttaatatttaattaaagtgggttaatgtttaattaaagttggttaatatttaggtaacgttg 36037864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 33198596 - 33198527
Alignment:
Q  110 ggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaat 179  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||    
T  33198596 ggttaatgtttaattaaagtgggttaatatttgattaaagttggttaatatttaggtgacgttggttaat 33198527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 14063281 - 14063197
Alignment:
Q  139 tttgattaaagttggttaatatttaggtgacgttggctaatgttggctggtgttggttaatgtgaaatatatatattatgtggaaaat 226  Q
    |||||||||||| ||||||||||||  | | ||||| ||||||    ||||||||||||||||||||||||| |||||||||||||||    
T  14063281 tttgattaaagtgggttaatatttatttaatgttggttaatgta---tggtgttggttaatgtgaaatatatgtattatgtggaaaat 14063197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 6511865 - 6511822
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgct 272  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||    
T  6511865 atattgttgtttatatcattcgagttgttattattaacgttgct 6511822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 16043113 - 16043038
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgattaagatgcatctgttggt 78  Q
    ||||||||||||||||||||||||   ||||||||||||||||| ||  | | ||||||||||| ||||| |||||||    
T  16043113 tttgatgttgttatatcttgagat--gttgtgtgctgccatgttgctgttgactattgattaagctgcatatgttggt 16043038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 33198619 - 33198565
Alignment:
Q  108 ttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatattt 162  Q
    ||||||||| ||| ||||||||||||||| |||| |||||||| |||||||||||    
T  33198619 ttggttaatatttgattaaagtgggttaatgtttaattaaagtgggttaatattt 33198565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 2584972 - 2585013
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttg 270  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  2584972 atattgttgtttatatcattcgagttgttattattaacgttg 2585013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 13446737 - 13446700
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgct 272  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  13446737 ttgtttatatcattcgagttgttattattaacgttgct 13446700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 27028078 - 27028037
Alignment:
Q  189 tgttggttaatgtgaaatatatatattatgtggaaaatgtat 230  Q
    ||||||||||| | || |||||||||||||||||||||||||    
T  27028078 tgttggttaatttaaactatatatattatgtggaaaatgtat 27028037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 21061810 - 21061774
Alignment:
Q  236 tgtttatatcattcgagttgttgttattaacgttgct 272  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  21061810 tgtttatatcattcaagttgttgttattaatgttgct 21061774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 16108673 - 16108919
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  16108673 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttgctggttattattgattaagatgcatatgttggttaatgttgtggaaaatgttggt 16108772  T
Q  101 taatat---------------att------ggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaat 179  Q
    ||||||               |||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16108773 taatatgctgattaatatttgattaaagtgggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggttaat 16108872  T
Q  180 gttggctggtgttggttaatgtgaaatatatatattatgtggaaaat 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  16108873 gttggctggtgttggttaatgtgaaatatatatattatgtggaaaat 16108919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 11303425 - 11303187
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |  |||  |||||| |     
T  11303425 tttgatgttgttatattttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatatgttggttaatatttga 11303326  T
Q  101 taatatattggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggct------------aatgttggctgg 188  Q
    | | |  | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |            ||||||||||||    
T  11303325 tta-aagtgggttaatgtttaattaaagtgggttaacctttgattaaagttggttaatatttaggtgacgttggttaatgttgtgggaaatgttggctgg 11303227  T
Q  189 tgttggttaatgtgaa--atatatatattatgtggaaaat 226  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  11303226 tgttggttaatgtgaaatatatatatattatgtggaaaat 11303187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 29796786 - 29796681
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||  |||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  29796786 tttgatgttgttatatcttgagattgtttgtgtactgccatgttgctgtttattattgattaagatgcatctgttggttaatgttgtgggaaatgttggt 29796687  T
Q  101 taatat 106  Q
    ||||||    
T  29796686 taatat 29796681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 29800605 - 29800500
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||  |||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  29800605 tttgatgttgttatatcttgagattgtttgtgtactgccatgttgctgtttattattgattaagatgcatctgttggttaatgttgtgggaaatgttggt 29800506  T
Q  101 taatat 106  Q
    ||||||    
T  29800505 taatat 29800500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 23664937 - 23665042
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    ||||||||||||||||||||||||||||||||| |||||||| | ||  |||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  23664937 tttgatgttgttatatcttgagattgtttgtgtactgccatgctgctgtttattattgattaagatgcatctgttggttaatgttgtgggaaatgttggt 23665036  T
Q  101 taatat 106  Q
    ||||||    
T  23665037 taatat 23665042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 46173851 - 46173782
Alignment:
Q  110 ggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaat 179  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||| ||||    
T  46173851 ggttaatgtttaattaaagcgggttaacgtttgattaaagttggttaatgtttaggtgatgttggttaat 46173782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 3289583 - 3289626
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgct 272  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||    
T  3289583 atattgttgtttatatcattcgagttgttattattgacgttgct 3289626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 14161645 - 14161676
Alignment:
Q  189 tgttggttaatgtgaaatatatatattatgtg 220  Q
    ||||||||||||||||||||||||||||||||    
T  14161645 tgttggttaatgtgaaatatatatattatgtg 14161676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 43277529 - 43277571
Alignment:
Q  189 tgttggttaatgtgaaatatatata-ttatgtggaaaatgtat 230  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  43277529 tgttggttaatgtgaaatacatatatttatgtggaaaatgtat 43277571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 10896730 - 10896791
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgatta 62  Q
    |||||| |||||||||||| ||| |||||| ||||||||||||| |   |||||||||||||    
T  10896730 tttgatattgttatatcttaagaatgtttgagtgctgccatgttgccgtttattattgatta 10896791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 15167303 - 15167242
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgatta 62  Q
    |||||| |||||||||||| ||| |||||| ||||||||||||| |   |||||||||||||    
T  15167303 tttgatattgttatatcttaagaatgtttgagtgctgccatgttgccgtttattattgatta 15167242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 20261397 - 20261159
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |  |||  |||||| |     
T  20261397 tttgatgttgttatattttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatatgttggttaatatttga 20261298  T
Q  101 taatatattggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggct------------aatgttggctgg 188  Q
    | | |  | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |            ||||||||||||    
T  20261297 tta-aagtgggttaatgtttaattaaagtgggttaacctttgattaaagttggttaatatttaggtgacgttggttaatgttgtgggaaatgttggctgg 20261199  T
Q  189 tgttggttaatgtgaa--atatatatattatgtggaaaat 226  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  20261198 tgttggttaatgtgaaatatatatatattatgtggaaaat 20261159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 10684749 - 10684854
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||  |||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  10684749 tttgatgttgttatatcttgagattgtttgtgtactgccatgttgctgtttattattgattaagatgcatctgttggttaatgttgtgggaaatgttggt 10684848  T
Q  101 taatat 106  Q
    ||||||    
T  10684849 taatat 10684854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 6482856 - 6482795
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgatta 62  Q
    |||||| |||||||||||| ||| |||||| ||||||||||||| |   |||||||||||||    
T  6482856 tttgatattgttatatcttaagaatgtttgagtgctgccatgtttccgtttattattgatta 6482795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 6486323 - 6486262
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgatta 62  Q
    |||||| |||||||||||| ||| |||||| ||||||||||||| |   |||||||||||||    
T  6486323 tttgatattgttatatcttaagaatgtttgagtgctgccatgtttccgtttattattgatta 6486262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 27851920 - 27851879
Alignment:
Q  189 tgttggttaatgtgaaatatatatattatgtggaaaatgtat 230  Q
    ||||||||||| ||||||| |||||||||||||||| |||||    
T  27851920 tgttggttaatttgaaatacatatattatgtggaaattgtat 27851879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 12942379 - 12942155
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |  |||  |||||| |     
T  12942379 tttgatgttgttatattttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatatgttggttaatatttga 12942280  T
Q  101 taatatattggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggct------------aatgttggctgg 188  Q
    | | |  | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |            ||||||||||||    
T  12942279 tta-aagtgggttaatgtttaattaaagtgggttaacctttgattaaagttggttaatatttaggcgacgttggttaatgttgtgggaaatgttggctgg 12942181  T
Q  189 tgttggttaatgtgaaatatatatat 214  Q
    ||||||||||||||||||||||||||    
T  12942180 tgttggttaatgtgaaatatatatat 12942155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 5110504 - 5110567
Alignment:
Q  209 atatattatgtggaaaatgtatattcttgtttatatcattcgagttgttgttattaacgttgct 272  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  5110504 atatattatgtggaaaatgtatattgttgtttatatcattcgagttgttattattaacgttgct 5110567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 5289863 - 5289926
Alignment:
Q  209 atatattatgtggaaaatgtatattcttgtttatatcattcgagttgttgttattaacgttgct 272  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||    
T  5289863 atatattatgtggaaaatgtatattgttgtttatatcattcgagttgttattattaccgttgct 5289926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 28289319 - 28289361
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgt 43  Q
    |||||||| |||||||||||||||||||||||| |||||||||    
T  28289319 tttgatgtcgttatatcttgagattgtttgtgtactgccatgt 28289361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 31735632 - 31735671
Alignment:
Q  189 tgttggttaatgtgaaatatatatattatgtggaaaatgt 228  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  31735632 tgttggttaatttgaaatacatatattatgtggaaaatgt 31735671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 113 - 226
Target Start/End: Original strand, 37805042 - 37805157
Alignment:
Q  113 taatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttggctggtgttggttaatgtgaa--atatat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||    
T  37805042 taatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggttaatgttggctggtgttggttaatgtgaaatatatat 37805141  T
Q  211 atattatgtggaaaat 226  Q
    ||||||||||||||||    
T  37805142 atattatgtggaaaat 37805157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 9776536 - 9776431
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||  |||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  9776536 tttgatgttgttatatcttgagattgtttgtgtactgccatgttgctgtttattattgattaagatgcatctgttggttaatgttgtgggaaatgttggt 9776437  T
Q  101 taatat 106  Q
    ||||||    
T  9776436 taatat 9776431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 37804887 - 37804968
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgattaagatgcatctgttggttaat 82  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||  ||||||||||||||| ||||| |||||||||||    
T  37804887 tttgatgttgttatatcttgagattgtttgtgcgctgccatgttgctgtttattattgattaagctgcatatgttggttaat 37804968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 41876290 - 41876353
Alignment:
Q  209 atatattatgtggaaaatgtatattcttgtttatatcattcgagttgttgttattaacgttgct 272  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  41876290 atatattatgtggaaaatgtatattgttgtttatatcattcgagttgttattattaacgttgct 41876353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 42242247 - 42242323
Alignment:
Q  108 ttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttgg 184  Q
    ||||||||| ||| || ||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  42242247 ttggttaatatttgatgaaaatgggttaacgtttgattaaagttggttcatatttaggtgacgttggttaatgttgg 42242323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 22750282 - 22750221
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgatta 62  Q
    |||||| |||||||||||| ||| |||||| ||||||||||||| |   |||||||||||||    
T  22750282 tttgatattgttatatcttaagaatgtttgagtgctgccatgttgccgtttattattgatta 22750221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1427 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold1427
Description:

Target: scaffold1427; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 1606 - 1501
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  1606 tttgatgttgttatatcttgagattgtttgtgtgttgccttgttactggttattattgattaagatgcatctgttggttaatgttgtgggaaatgttggt 1507  T
Q  101 taatat 106  Q
    ||||||    
T  1506 taatat 1501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0506 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0506
Description:

Target: scaffold0506; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 8817 - 8699
Alignment:
Q  108 ttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttggctggtgttggttaatgtgaaata 207  Q
    ||||||||||| | |||||||||||||||  |||||||||||| |||| |||||||  | ||||||| |||||||||||||||||||||||| |||||||    
T  8817 ttggttaatgtatgattaaagtgggttaatatttgattaaagtgggttgatatttatttaacgttggttaatgttggctggtgttggttaatatgaaata 8718  T
Q  208 tatatattatgtggaaaat 226  Q
    ||| |||||||||||||||    
T  8717 tatgtattatgtggaaaat 8699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 29327742 - 29327668
Alignment:
Q  110 ggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttgg 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29327742 ggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggttaatgttgg 29327668  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 21322046 - 21322150
Alignment:
Q  122 attaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttggctggtgttggttaatgtgaaatatatatattatgtgg 221  Q
    |||||||||||||||  |||||||||||| |||| |||||||  | ||||||| ||||||||||||||||||||||||||||||||||| |||||||||     
T  21322046 attaaagtgggttaatatttgattaaagtgggttgatatttatttaacgttggttaatgttggctggtgttggttaatgtgaaatatatgtattatgtga 21322145  T
Q  222 aaaat 226  Q
    |||||    
T  21322146 aaaat 21322150  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 21326634 - 21326738
Alignment:
Q  122 attaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttggctggtgttggttaatgtgaaatatatatattatgtgg 221  Q
    |||||||||||||||  |||||||||||| |||| |||||||  | ||||||| |||||||||||||| |||||||||||||||||||| ||||||||||    
T  21326634 attaaagtgggttaatatttgattaaagtgggttgatatttatttaacgttggttaatgttggctggtattggttaatgtgaaatatatgtattatgtgg 21326733  T
Q  222 aaaat 226  Q
    |||||    
T  21326734 aaaat 21326738  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 17907678 - 17907719
Alignment:
Q  189 tgttggttaatgtgaaatatatatattatgtggaaaatgtat 230  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  17907678 tgttggttaatgtgaaatacatatattatgtggaaaaagtat 17907719  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 22419439 - 22419475
Alignment:
Q  8 ttgttatatcttgagattgtttgtgtgctgccatgtt 44  Q
    ||||||||||||||||||| |||||||||||||||||    
T  22419439 ttgttatatcttgagattgcttgtgtgctgccatgtt 22419475  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 35026880 - 35026923
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgtt 44  Q
    |||||| ||||||||||||||||||| ||||| |||||||||||    
T  35026880 tttgatattgttatatcttgagattgcttgtgagctgccatgtt 35026923  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2418891 - 2418949
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattga 59  Q
    |||||| ||||||||| || |||||| ||||||||||||||||| ||  ||||||||||    
T  2418891 tttgatattgttatatattaagattgcttgtgtgctgccatgttgctgtttattattga 2418949  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 8728672 - 8728725
Alignment:
Q  9 tgttatatcttgagattgtttgtgtgctgccatgttactagttattattgatta 62  Q
    ||||||||||| ||| |||||| |||||||||||||||   |||||||||||||    
T  8728672 tgttatatcttaagaatgtttgagtgctgccatgttaccgtttattattgatta 8728725  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 29327765 - 29327716
Alignment:
Q  108 ttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaa 157  Q
    ||||||||| ||| ||||||||||||||| |||| |||||||| ||||||    
T  29327765 ttggttaatatttgattaaagtgggttaatgtttaattaaagtgggttaa 29327716  T

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Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 19778232 - 19778350
Alignment:
Q  108 ttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttggctggtgttggttaatgtgaaata 207  Q
    ||||||||||| | |||||||||||||||  |||||||||||| |||| |||||||  | ||||||| |||||||||||||||||||||||| |||||||    
T  19778232 ttggttaatgtatgattaaagtgggttaatatttgattaaagtgggttgatatttatttaacgttggttaatgttggctggtgttggttaatatgaaata 19778331  T
Q  208 tatatattatgtggaaaat 226  Q
    ||| |||||||||||||||    
T  19778332 tatgtattatgtggaaaat 19778350  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 18275206 - 18275163
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgct 272  Q
    ||||| ||||||||||||||| ||||||| ||||||||||||||    
T  18275206 atattgttgtttatatcattcaagttgttattattaacgttgct 18275163  T

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Target: scaffold0422 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 3201 - 3120
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgattaagatgcatctgttggttaat 82  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||  |||||| |||||||| ||||| |||||||||||    
T  3201 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttgctgtttattaatgattaagctgcatatgttggttaat 3120  T

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Target: scaffold0326 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0326
Description:

Target: scaffold0326; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 113 - 176
Alignment:
Q  209 atatattatgtggaaaatgtatattcttgtttatatcattcgagttgttgttattaacgttgct 272  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  113 atatattatgtggaaaatgtatattgttgtttatatcattcgagttgttattattaacgttgct 176  T

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Target: scaffold1419 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1419
Description:

Target: scaffold1419; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 124 - 67
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattg 58  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||  |||||||||    
T  124 tttgatattgttatatcttgagattgtttgtgtgctgccatgttgctgtttattattg 67  T

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Target: scaffold0790 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 6136 - 6067
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactagttattattgattaagatgcat 70  Q
    |||||| |||||||||||||| |||||||||||||||||||||| ||  |||||||||| |||| |||||    
T  6136 tttgatattgttatatcttgatattgtttgtgtgctgccatgttgctgtttattattgagtaagctgcat 6067  T

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Target: scaffold0010 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 127127 - 127162
Alignment:
Q  189 tgttggttaatgtgaaatatatatattatgtggaaa 224  Q
    ||||||||||||||||||| ||||||||||||||||    
T  127127 tgttggttaatgtgaaatacatatattatgtggaaa 127162  T

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Target: scaffold0042 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 28620 - 28580
Alignment:
Q  189 tgttggttaatgtgaaatatatatattatgtggaaaatgtat 230  Q
    ||||||||||||||||||| ||||||||||| ||||||||||    
T  28620 tgttggttaatgtgaaatacatatattatgt-gaaaatgtat 28580  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 59634 - 59593
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttg 270  Q
    ||||| || |||||||||||||||||||| ||||||||||||    
T  59634 atattgttttttatatcattcgagttgttattattaacgttg 59593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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