View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_low_46 (Length: 266)
Name: NF7991_low_46
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_low_46 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 46231071 - 46230834
Alignment:
| Q |
3 |
gaagagtctagtgaccaaacttactgaattagtcataaaatttcaagcttgtttaccaaacattgcgtagttaaaaccactcaaactcttcctggaaaag |
102 |
Q |
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| T |
46231071 |
gaagagtctagtgaccaaactttctgaattagtcataaaatttcaagcttgtttaccaaacattgcgtagttaaaaccactcaaactcttcctggaaaag |
46230972 |
T |
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| Q |
103 |
aattcaacattatttttgtgcatggttaaacaatcccaggaaagccgatgaatacctttagattactctctattataacccccaccagaaagaattcaac |
202 |
Q |
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| T |
46230971 |
aattcaacattatttttgtgcatggttaaacaatcccaggaaagccga-gaatacctttagattattctctattataa-ccccaccagaaagaattcaac |
46230874 |
T |
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| Q |
203 |
atcttatcaatttcatcaataagagaggacaacgtttaat |
242 |
Q |
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| T |
46230873 |
atcttatcaatttcatcactaagagaggacaacgtttaat |
46230834 |
T |
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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 53648 - 53686
Alignment:
| Q |
182 |
ccccaccagaaagaattcaacatcttatcaatttcatca |
220 |
Q |
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| T |
53648 |
ccccaccagaaagaattcaacattttttcaatttcatca |
53686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 8969928 - 8969965
Alignment:
| Q |
182 |
ccccaccagaaagaattcaacatcttatcaatttcatc |
219 |
Q |
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| T |
8969928 |
ccccaccagaaagaattcatcatcttctcaatttcatc |
8969965 |
T |
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