View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7991_low_47 (Length: 266)

Name: NF7991_low_47
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7991_low_47
NF7991_low_47
[»] chr4 (8 HSPs)
chr4 (18-242)||(39091103-39091327)
chr4 (148-242)||(39087842-39087936)
chr4 (148-242)||(39070784-39070878)
chr4 (148-242)||(39082188-39082282)
chr4 (152-242)||(39080264-39080354)
chr4 (185-234)||(39097556-39097605)
chr4 (184-227)||(39075094-39075137)
chr4 (185-242)||(7615118-7615175)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 39091103 - 39091327
Alignment:
Q  18 tgtacaatgttcagatacacaccaacataattcacacaagagaaatgtaaatagaaacttattaaacataaattaagttacatcattacataattacaac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39091103 tgtacaatgttcagatacacaccaacataattcacacaagagaaatgtaaatagaaacttattaaacataaattaagttacatcattacataattacaac 39091202  T
Q  118 aatctcaccacaagatagtaataataatgtgtcacattacttagaactaggaaccaagaactcagcatcatttcccaaagcctccaaaatctcataagaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39091203 aatctcaccacaagatagtaataataatgtgtcacattacttagaactaggaaccaagaactcagcatcatttcccaaagcctccaaaatctcataagaa 39091302  T
Q  218 agacaaacttcaacatctatgctac 242  Q
    |||||||||||||||||||||||||    
T  39091303 agacaaacttcaacatctatgctac 39091327  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 148 - 242
Target Start/End: Original strand, 39087842 - 39087936
Alignment:
Q  148 gtcacattacttagaactaggaaccaagaactcagcatcatttcccaaagcctccaaaatctcataagaaagacaaacttcaacatctatgctac 242  Q
    |||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  39087842 gtcacattaagtagaactaggaaccatgaactcagcatcatttcccaaagcctccaaaatctcataagaaagacaaacttcaatatcaatgctac 39087936  T

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Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 148 - 242
Target Start/End: Original strand, 39070784 - 39070878
Alignment:
Q  148 gtcacattacttagaactaggaaccaagaactcagcatcatttcccaaagcctccaaaatctcataagaaagacaaacttcaacatctatgctac 242  Q
    |||||||||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  39070784 gtcacattacttagaaattggaaccaagaactcaacatcatttgccaaagcctccaaaatctcataagaaagacaaatttcaacatctatactac 39070878  T

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Target: chr4; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 148 - 242
Target Start/End: Original strand, 39082188 - 39082282
Alignment:
Q  148 gtcacattacttagaactaggaaccaagaactcagcatcatttcccaaagcctccaaaatctcataagaaagacaaacttcaacatctatgctac 242  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||  |||||||||||||||||| ||| |||||||    
T  39082188 gtcagattacttagaactaggaaccaagaactcggcatcatttcccaaagcctccaatatctcgaaagaaagacaaacttcaatatcaatgctac 39082282  T

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Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 39080264 - 39080354
Alignment:
Q  152 cattacttagaactaggaaccaagaactcagcatcatttcccaaagcctccaaaatctcataagaaagacaaacttcaacatctatgctac 242  Q
    |||||||||||||  ||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||  ||||||| ||| ||||    
T  39080264 cattacttagaacatggaaccatgaactcagtatcatttcccaaagcctccaaaatttcataagaaagacaaagctcaacatttatactac 39080354  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 39097556 - 39097605
Alignment:
Q  185 tcatttcccaaagcctccaaaatctcataagaaagacaaacttcaacatc 234  Q
    |||||||||| |||||||||||| ||||||||||| ||||||||||||||    
T  39097556 tcatttcccatagcctccaaaatatcataagaaaggcaaacttcaacatc 39097605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 39075094 - 39075137
Alignment:
Q  184 atcatttcccaaagcctccaaaatctcataagaaagacaaactt 227  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||    
T  39075094 atcatttcccatagcctccaaaatatcataaggaagacaaactt 39075137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 7615118 - 7615175
Alignment:
Q  185 tcatttcccaaagcctccaaaatctcataagaaagacaaacttcaacatctatgctac 242  Q
    ||||||||||  ||||||||||||||||  ||||||||||||| || |||||| ||||    
T  7615118 tcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactac 7615175  T

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