View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_low_50 (Length: 252)
Name: NF7991_low_50
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_low_50 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 127 - 252
Target Start/End: Original strand, 30917858 - 30917983
Alignment:
| Q |
127 |
tcatgaaaaaatggtttttcacatatataatccaagccaacactgttatagttttcttaagatgtaaagcaaggtacaaatttaaattaaataaaatcaa |
226 |
Q |
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| T |
30917858 |
tcatgaaaaaatggttttcaacatgtataatgcaagccaacactgttatagttttcttaagatgcaaagcaaggtacaaatttaaattaaataaaatcaa |
30917957 |
T |
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| Q |
227 |
ttaaaatatagagtttatttccaaac |
252 |
Q |
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| T |
30917958 |
ttaaaatatagagtttatttccaaac |
30917983 |
T |
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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 30917726 - 30917759
Alignment:
| Q |
16 |
gaaatgataaagatatgaaaatatgaaaaacaaa |
49 |
Q |
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| T |
30917726 |
gaaatgataaagatatgaaaatatgaaaaacaaa |
30917759 |
T |
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