View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7991_low_51 (Length: 252)

Name: NF7991_low_51
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7991_low_51
NF7991_low_51
[»] chr2 (5 HSPs)
chr2 (152-234)||(35601553-35601636)
chr2 (152-234)||(35639378-35639461)
chr2 (1-47)||(35639558-35639604)
chr2 (136-169)||(35601498-35601531)
chr2 (136-169)||(35639481-35639514)


Alignment Details
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 35601553 - 35601636
Alignment:
Q  152 agctataaatttacaatcggtttcgaacaaa-cagcatgcattccgttccatatgaccactttgatatattcaagcaagctaat 234  Q
    ||||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  35601553 agctataaatttacaatcgttttcgaacaaaacagcatgtattctgttccatatgaccactttgatatattcaagcaagctaat 35601636  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 35639461 - 35639378
Alignment:
Q  152 agctataaatttacaatcggtttcgaacaaa-cagcatgcattccgttccatatgaccactttgatatattcaagcaagctaat 234  Q
    ||||||||||||||||||| ||||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||||||||||    
T  35639461 agctataaatttacaatcgttttcgaacaaaacagcatgtattctgttccatatgatcactttgatatattcaagcaagctaat 35639378  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35639604 - 35639558
Alignment:
Q  1 tatgatcacataaagagagtttagcaatacaatgagttattttattt 47  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  35639604 tatgatcacataaagagaatttagcaatacaatgagttattttattt 35639558  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 35601498 - 35601531
Alignment:
Q  136 ataaggcaagagtattagctataaatttacaatc 169  Q
    ||||||||||||||||||||||||||||||||||    
T  35601498 ataaggcaagagtattagctataaatttacaatc 35601531  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 35639514 - 35639481
Alignment:
Q  136 ataaggcaagagtattagctataaatttacaatc 169  Q
    ||||||||||||||||||||||||||||||||||    
T  35639514 ataaggcaagagtattagctataaatttacaatc 35639481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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