View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_low_57 (Length: 212)
Name: NF7991_low_57
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 33605551 - 33605734
Alignment:
| Q |
14 |
agaagaacacagtatgccacaattacttgcaacacaagctatcacaagttctaatgaaggaaaacagttgtaattaactaacttctgagtttgttatgga |
113 |
Q |
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| T |
33605551 |
agaagaacacagtatgccacaattacttgcaacacaagctatcacaagttctaatgaaggaaaacagttgtaattaactaacttctgagtttgttatgga |
33605650 |
T |
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| Q |
114 |
gtaggatgcaatcctataagctagagtatacagtagcttagcgtagtctatcaaatagaaactctataaatagttgttatgact |
197 |
Q |
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| T |
33605651 |
gaaggatgcaatcctataagatagagtatacagtagcttagcgtagtctatcaaatagaaactctataaatagttgttatgact |
33605734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 33448229 - 33448057
Alignment:
| Q |
14 |
agaagaacacagtatgccacaattacttgcaacacaagctatcacaagttctaatgaaggaaaacagttgtaattaactaacttctgagtttgttatgga |
113 |
Q |
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| T |
33448229 |
agaagaacacactaagtctcaattgcttgcagcacaagctaacatagcttctagtgaaagaaaacggttgtaa----ctaactttagagtttgttatgat |
33448134 |
T |
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| Q |
114 |
gtaggatgcaatcctataagctagagtatacagtagcttagcgtagtctatcaaatagaaactctataaatagttgt |
190 |
Q |
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| T |
33448133 |
gaaggatacaatcctataagatagcgtatacaatagcttagtgtagtctatcaaataggaactctataaatacttgt |
33448057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 3931345 - 3931458
Alignment:
| Q |
14 |
agaagaacacagtatgccacaattacttgcaacacaagctatcacaagttctaatgaaggaaaacagttgtaattaactaacttctgagtttgttatgga |
113 |
Q |
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||||||||||| | | ||||||||||||||||||||| ||||| ||||| |||||||||||||| |||| |||||||||||||||||||||||| | |
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| T |
3931345 |
agaagaacacaatgtaccacaattacttgcaacacaatctatctcaagtcttaatgaaggaaaacggttg----taactaacttctgagtttgttatgca |
3931440 |
T |
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| Q |
114 |
gtaggatgcaatcctata |
131 |
Q |
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| T |
3931441 |
gcgagatgcaatcctata |
3931458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 27245072 - 27245024
Alignment:
| Q |
15 |
gaagaacacagtatgccacaattacttgcaacacaagctatcacaagtt |
63 |
Q |
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||||||||| ||||||||||||||||||| |||||| || |||||||| |
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| T |
27245072 |
gaagaacaccatatgccacaattacttgcagcacaagttaacacaagtt |
27245024 |
T |
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