View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_low_58 (Length: 206)
Name: NF7991_low_58
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 43621501 - 43621675
Alignment:
| Q |
17 |
atgaaaaggaaaaagaaataagcagtttgattaaaagaaggaagaagtttcacttgaatacaaggagtgagatggtgagaaagtttcaacgtgatgtgga |
116 |
Q |
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| T |
43621501 |
atgaaaaggaaaaaggaataagcagtttgattaaaagaaggaagaagtttcacttgaatccaaggagtgagatggtgagaaagtttcaacgtgatgtgga |
43621600 |
T |
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| Q |
117 |
aagaaaactggaaaaaaggttcctgtattctcttcaaaaataacaacacattgatgggcaaaactgtaaattact |
191 |
Q |
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| T |
43621601 |
aagaaaactggaaaaaaggttccagtattctcttcaaaaataacaacacattgatgggcaaaactgtaaattact |
43621675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 34081540 - 34081713
Alignment:
| Q |
17 |
atgaaaaggaaaaagaaataagcagtttgattaaaagaaggaagaagtttcacttgaatacaaggagtgagatggtgagaaagtttcaacgtgatgtgga |
116 |
Q |
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| T |
34081540 |
atgaaaaggaaaaaggaataagcagtttgattaaaagaaggaagaagtttcacttgaatccaaggagtgagatggtgagaaagtttcaacgtgatgtgga |
34081639 |
T |
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| Q |
117 |
aagaaaactggaaaaaaggttcctgtattctcttcaaaaataacaacacattgatgggcaaaactgtaaattac |
190 |
Q |
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| T |
34081640 |
aagaaaactggaaaaaaagttccagtattctcttcaaaaataacaacacattgatgggcaaaactgtaaattac |
34081713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 16360119 - 16359993
Alignment:
| Q |
17 |
atgaaaaggaaaaagaaataagcagtttgattaaaagaaggaagaagtttcacttgaatacaaggagtgagatggtgagaaagtttcaacgtgatgtgga |
116 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
16360119 |
atgaaaaggaaaaaggaataagcagtttgattaaaagaaggaagaagtttcacttgaatccaaggagtgagatggtgagaaagtttcaacgtgatgtgga |
16360020 |
T |
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| Q |
117 |
aagaaaactggaaaaaaggttcctgta |
143 |
Q |
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|||||||||||||||||||||| |||| |
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| T |
16360019 |
aagaaaactggaaaaaaggttcatgta |
16359993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 12720459 - 12720638
Alignment:
| Q |
17 |
atgaaaaggaaaaagaaataagc-agtttgattaaaagaaggaagaagtttcacttgaatacaaggagtgagatggtgagaaagtttcaacgtgatgtg- |
114 |
Q |
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||||||||||| ||| |||| || ||| |||||||||||| |||||| |||||||||||| |||| ||||||||||||||| ||||||||||||| || |
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| T |
12720459 |
atgaaaaggaagaaggaatatgcgagtctgattaaaagaatgaagaaatttcacttgaatccaagaagtgagatggtgagagtgtttcaacgtgatatga |
12720558 |
T |
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| Q |
115 |
----gaaagaaaactggaaaaaaggttcctgt-attctcttcaaaaataacaacacattgatgggcaaaactgtaaattac |
190 |
Q |
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||||||||| || |||||||||||| || |||||||| ||||||||||| | | ||||||||||||||||||||||| |
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| T |
12720559 |
tatggaaagaaaagtg-aaaaaaggttcccgtgattctcttgaaaaataacaaaatactgatgggcaaaactgtaaattac |
12720638 |
T |
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