View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7991_low_6 (Length: 568)
Name: NF7991_low_6
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 115; Significance: 4e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 188 - 302
Target Start/End: Complemental strand, 42028178 - 42028064
Alignment:
| Q |
188 |
cgcagccagaacacgttcagtcacctcagcacacttgttgatgtcatgagatccatccactaggatttcgggctccactataggaactaggccattctct |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42028178 |
cgcagccagaacacgttcagtcacctcagcacacttgttgatgtcatgagatccatccactaggatttcgggctccactataggaactaggccattctct |
42028079 |
T |
|
| Q |
288 |
tggcatatgacagca |
302 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
42028078 |
tggcatatgacagca |
42028064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 42028070 - 42028038
Alignment:
| Q |
371 |
gacagcacgccacttggcaaatcgggcaccagc |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
42028070 |
gacagcacgccacttggcaaatcgggcaccagc |
42028038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 78 - 334
Target Start/End: Original strand, 26629676 - 26629932
Alignment:
| Q |
78 |
gctataacttcaggggcaactttttgagaatctaaaccgggggttaccatgttaggcttcaaaagagttccttcgagcagaacatgatgatcacttaaag |
177 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||| | || || || ||||| ||||||||||||||||| ||||| || ||||||||||| ||||||| || |
|
|
| T |
26629676 |
gctataacctcaggagcaactttaggagaatctgatcctggtgtaaccatattaggcttcaaaagagtaccttcaagaagaacatgatggtcacttagag |
26629775 |
T |
|
| Q |
178 |
ctttgtagcacgcagccagaacacgttcagtcacctcagcacacttgttgatgtcatgagatccatccactaggatttcgggctccactataggaactag |
277 |
Q |
| |
|
| ||||| || || || ||||| ||||| || || ||||| ||||| ||||| || | |||||||||||| || || |||||||| || ||||| | |
|
|
| T |
26629776 |
ccttgtaacatgctgcaagaacgcgttctgttacatcagcgcactttgcaatgtcgtggggtccatccactagaatctcaggctccacaattggaaccaa |
26629875 |
T |
|
| Q |
278 |
gccattctcttggcatatgacagcatagcgagctagaccataggcgttctcgtggat |
334 |
Q |
| |
|
||||||||||| |||||||| || || ||||||| |||||||||||| |||||||| |
|
|
| T |
26629876 |
accattctcttgacatatgacggcgtaacgagctaaaccataggcgttttcgtggat |
26629932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 117 - 403
Target Start/End: Original strand, 29237297 - 29237583
Alignment:
| Q |
117 |
ggggttaccatgttaggcttcaaaagagttccttcgagcagaacatgatgatcacttaaagctttgtagcacgcagccagaacacgttcagtcacctcag |
216 |
Q |
| |
|
||||| ||||||||||||||||| ||||| ||||| || || ||||| || ||| | || || |||||||| || || || || || || || ||| |
|
|
| T |
29237297 |
ggggtaaccatgttaggcttcaagagagtgccttcaaggaggacatggtggtcattcaaggccttgtagcatgctgcaaggaccttctcggtaacagcag |
29237396 |
T |
|
| Q |
217 |
cacacttgttgatgtcatgagatccatccactaggatttcgggctccactataggaactaggccattctcttggcatatgacagcatagcgagctagacc |
316 |
Q |
| |
|
||||||| | |||||||||| |||||| || ||||| || ||||| || || || || || |||||||||||||||||||| ||||| || || | ||| |
|
|
| T |
29237397 |
cacacttttgaatgtcatgaggtccatcaacaaggatctcaggctcaacaattggtacaagtccattctcttggcatatgactgcatatcgggccaaacc |
29237496 |
T |
|
| Q |
317 |
ataggcgttctcgtggatagccagctcagatggctcgttgggaccaatcttgaggacagcacgccacttggcaaatcgggcaccagc |
403 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||| ||||| || || || || || |||||||| || || || || |||||||| |
|
|
| T |
29237497 |
ataggcattctcgtggatagagtgctcagatggctcattggggccgattttaagcactgcacgccatttagcgaaacgtgcaccagc |
29237583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 403
Target Start/End: Original strand, 29233644 - 29233833
Alignment:
| Q |
214 |
cagcacacttgttgatgtcatgagatccatccactaggatttcgggctccactataggaactaggccattctcttggcatatgacagcatagcgagctag |
313 |
Q |
| |
|
|||||||||| | |||||||||| |||||| || ||||| || ||||| || || || || || |||||||||||||||||||| ||||| || || | |
|
|
| T |
29233644 |
cagcacacttttgaatgtcatgaggtccatcaacaaggatctcaggctcaacaattggtacaagtccattctcttggcatatgactgcatatcgggccaa |
29233743 |
T |
|
| Q |
314 |
accataggcgttctcgtggatagccagctcagatggctcgttgggaccaatcttgaggacagcacgccacttggcaaatcgggcaccagc |
403 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||| ||||| || || || || || |||||||| || || || || |||||||| |
|
|
| T |
29233744 |
accataggcattctcgtggatagagtgctcagatggctcattggggccgattttaagcactgcacgccatttagcgaaacgtgcaccagc |
29233833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 391
Target Start/End: Complemental strand, 42280404 - 42280343
Alignment:
| Q |
330 |
tggatagccagctcagatggctcgttgggaccaatcttgaggacagcacgccacttggcaaa |
391 |
Q |
| |
|
||||||| || |||||| ||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42280404 |
tggatagacaactcagagggctcattgggaccaatcttgaggaccgcacgccacttggcaaa |
42280343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University