View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_low_9 (Length: 530)
Name: NF7991_low_9
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 23 - 513
Target Start/End: Complemental strand, 44575965 - 44575475
Alignment:
| Q |
23 |
aggatttgcaattccgacggtttgtcttgctttctcgataatcatctttctatttggtcgcggcacttacatttacaaaaaacctcaagggagcgttttt |
122 |
Q |
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| T |
44575965 |
aggatttgcaattccgacggtttgtcttgctttctcaataatcatctttctatttggtcgcggcacttacatttacaaaaaacctcaagggagcgttttt |
44575866 |
T |
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| Q |
123 |
acagacatggcaaaggtgatcgttgcagcatgtcgaaaacgcaaacttcagctttcaaatagaactttatatgatcatgtttctacattgtcagaatcag |
222 |
Q |
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| T |
44575865 |
acagacatggcaaaggtgatcgttgcagcatgtcgaaaacgcaaacttcagctttcaaatagaactttatatgatcatgtttctacattgtcagaatcag |
44575766 |
T |
|
| Q |
223 |
aaaacattaggcttgttcaaacagacaggttcaagtttcttgataaggcggctataatagctgaaccaagtgaattgaacaaccaaggaattgctaagaa |
322 |
Q |
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| T |
44575765 |
aaaacattaggcttgttcaaacagacaggttcaagtttcttgataaggcggctataatagctgaaccaagtgaattgaacaaccaaggaattgctaagaa |
44575666 |
T |
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| Q |
323 |
tggttggagactttgtagtttgcaacaagtggaacacttgaaatgcttgtttggaattctaccagtatgggtgacaggaatctgttgtttcattgtaatg |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44575665 |
tggttggagactttgtagtttgcaacaagtggaacacttgaaatgcttgtttggaattctaccagtatgggtgacaggaatttgttgtttcattgtaatg |
44575566 |
T |
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| Q |
423 |
gatcagcagagcacatttggtgtgcttcaagttatacaaactgataggtctattggatctcacttcaaggttccaccaggatggatgaact |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44575565 |
gatcagcagagcacatttggtgtgcttcaagttatacagactgataggtctattggatctcacttcaaggttccaccaggatggatgaact |
44575475 |
T |
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