View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7992_high_1 (Length: 410)
Name: NF7992_high_1
Description: NF7992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7992_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 12 - 394
Target Start/End: Original strand, 42371007 - 42371389
Alignment:
| Q |
12 |
gaatatgaatcagttgagtcattagtaagtttggtacaaagtttcttcaatcactatcggacaacgacctgagaattgcaacaagattgcatgtcatcaa |
111 |
Q |
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| T |
42371007 |
gaataagaaccagttgagtcattagtaagtttggtacaaagtttcttcaatcactatctgacaacgacctaagaattgcaacaagattgcatgtcatcaa |
42371106 |
T |
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| Q |
112 |
tcaatctgtaccagaaaaatgaagcggtactaactgaacaacttaaatcattttcaaaattagcattacagttta-atataaccaaatgcttcttaagtc |
210 |
Q |
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| T |
42371107 |
tcaatctgtaccagaaaaatgaagcggtactaactgaacaacttaa-tcattttctaaattagcattgcagttaatatataaccaaatgcttcctaagtc |
42371205 |
T |
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| Q |
211 |
actgagtttgaaagcaacaattttctcttccaaacaaaaggatgatgtcccctgcagaattactactgtctagtgtttacctatatggacattccaaaaa |
310 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42371206 |
actgagtttgaaagcaacaattttgccttccaaacaaaaggatgatgtcccctgcagaattactactgtctagtgtttacctacatggacattccaaaaa |
42371305 |
T |
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| Q |
311 |
tcaaaagaaatcctgcatttccaccgcttattagagtaactcttttatatataatctgcagcggtttccctttcaagttacttt |
394 |
Q |
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| T |
42371306 |
tcaaaagaaatcctgcatttccaccgcttattagagtaactcttttatatataatctgcagcggtttccctgtcaagttacttt |
42371389 |
T |
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