View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7992_low_1 (Length: 744)
Name: NF7992_low_1
Description: NF7992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7992_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 518
Target Start/End: Complemental strand, 47700516 - 47700010
Alignment:
| Q |
18 |
cttttatgggaggcagaactaaaactagaagcctttcagttccagatatgcaatttggagaagaaaattcagaggcaataggttcaaatgagtccaagag |
117 |
Q |
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| T |
47700516 |
cttttatgggaggcagaactaaaactagaagcctttcagttccagatatgcaatttggagaagaaaattcagaggcaataggttcaaatgagtccaagag |
47700417 |
T |
|
| Q |
118 |
acaagagtaaatcaacaatacaatctgtaaacaagaatttgattgctgaagtattgtgatttagcaactttggtcccccactttttacacgagcaatttt |
217 |
Q |
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|||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47700416 |
acaagagtaaatcaacaatacaatctctgaacaagaattcgattgctgaagtattgtgatttagcaactttggtcccccactttttacacgcgcaatttt |
47700317 |
T |
|
| Q |
218 |
ggtctcaatattaagtccctaattgtatttttgtgactccatttcactttgtgtaagtcaattgggacat----atatgagatatactcaattgaagcga |
313 |
Q |
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|||| | ||||||| |||||||||||||||||||||||||| |||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
47700316 |
ggtccccatattaaatccctaattgtatttttgtgactccacttcattttgtgtaagtcaactgggacatatatatatgagatatactcaattgaagcga |
47700217 |
T |
|
| Q |
314 |
gcaaatgtgttacagaaataggatacacatcacataaattct--tatggtattgacatgtaacaaatgattggtctactagtcttagagggctgaacact |
411 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |||||||||||| || ||||||||||| |||||| ||||||| ||||||||||||| |
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| T |
47700216 |
gcaaatgtgttacagaattaggatacacatcacataaattcttatatggtattgacttgcaacaaatgatttgtctaccagtcttaaagggctgaacact |
47700117 |
T |
|
| Q |
412 |
caccaagaaatatttctacaaaattgcaccttgttgagaaattacataaaagactaaagttatatcaagagaaaccctccttaactatgagtgaggtcaa |
511 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47700116 |
cgccaagaaatatttctacaaaattgcaccttgttgagaaattacatagaagagtaaagttatatcaagagaaaccctccttaactatgagtgaggtcaa |
47700017 |
T |
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| Q |
512 |
aataaac |
518 |
Q |
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||||||| |
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| T |
47700016 |
aataaac |
47700010 |
T |
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