View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7992_low_3 (Length: 307)
Name: NF7992_low_3
Description: NF7992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7992_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 2420380 - 2420668
Alignment:
| Q |
1 |
agagtgaagagggagtttacgtttgtgattgtggcttttatgtgcacatgatatttcctcttcttcttcaacccctcatcttaattcattcgttgtcttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2420380 |
agagtgaagagggagtttacgtttgtgattgtggcttttatgtgcacatgatatttcctcttcttcttcaacccctcatcttaattcattcgttgtcttt |
2420479 |
T |
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| Q |
101 |
ccattaacccgttaatttttcaatccttaattaaaccaatgggtggagcttcaatgatttgtgatttggttgtgggtttgcagcagtttctaatgtctag |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||| |||| |
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| T |
2420480 |
ccattaacctgttaatttttcaatccttaattaaaccaatgggtgcagcttcaatgatttgtgatttggttgtgggtttgcatcagtttctgatgcctag |
2420579 |
T |
|
| Q |
201 |
tttaatggaaggatttaaagaggaaagaaggattgtaagagaataagggtgtgatatgttttgagtttgatagaggatgaagtagagag |
289 |
Q |
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| T |
2420580 |
tttaatggaaggatttaaagaggaaagaaggattgggagagaataagggtgtgatatgttttgagtttgacagaggatgaagtagagag |
2420668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 10615537 - 10615812
Alignment:
| Q |
1 |
agagtgaagagggagtttacgtttgtgattgtggcttttatgtgcacatgatatttcctcttcttcttcaacccctcatcttaattcattcgttgtcttt |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10615537 |
agagtgaagagggagtttacgtttgtgattatggcttttatgtgcacatgatattccctcttcttcttcaacccctcgtcttaattcattcgttgtcttt |
10615636 |
T |
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| Q |
101 |
ccattaacccgttaatttttcaatccttaattaaaccaatgggtggagcttcaatgatttgtgatttggttgtgggtttgcagcagtttctaatgtctag |
200 |
Q |
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| T |
10615637 |
ccattaacacgttaatttttcaatccttaattaaaccaatgggtgcagcttcaatgatttgtgatttggttgtgggtttgcagcagtttctgatgcctag |
10615736 |
T |
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| Q |
201 |
tttaatggaaggatttaaagaggaaagaaggattgtaagagaataagggtgtgatatgttttgagtttgatagaggatgaagtagagag |
289 |
Q |
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| T |
10615737 |
tttaat-------------gaggaaagaaggattgggagagaataagggtgtgatatgttttgagtttgatagaggatgaagtagagag |
10615812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 46469785 - 46469498
Alignment:
| Q |
1 |
agagtgaagagggagtttacgtttgtgattgtggcttttatgtgcacatgatatttcctcttcttcttcaacccctcatcttaattcattcgttgtcttt |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46469785 |
agagtgaagagggagtttacgtt-gtgattgtggcttttatgtgcacatgatatttcctcttcttcttcaacccctcatcttaattcattcggtgtcttt |
46469687 |
T |
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| Q |
101 |
ccattaacccgttaatttttcaatccttaattaaaccaatgggtggagcttcaatgatttgtgatttggttgtgggtttgcagcagtttctaatgtctag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
46469686 |
ccattaacccgttaatttttcaatccttaattaaaccaatgggtgcagcttcaatgatttgtgatttggttgtgggtttgcagcagtttctgatgcctag |
46469587 |
T |
|
| Q |
201 |
tttaatggaaggatttaaagaggaaagaaggattgtaagagaataagggtgtgatatgttttgagtttgatagaggatgaagtagagag |
289 |
Q |
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| T |
46469586 |
tttaatggaaggatttaaagaggaaagaaggattgggagagaataagggtgtgatatattttgagtttgacagaggatgaagtagagag |
46469498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 41698657 - 41698722
Alignment:
| Q |
96 |
tctttccattaacccgttaatttttcaatccttaattaaaccaatgggtggagcttcaatgatttg |
161 |
Q |
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||||||||||||| | |||||||||||||| ||||| |||| |||||||| ||||||||||||||| |
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| T |
41698657 |
tctttccattaactcattaatttttcaatcattaatcaaacaaatgggtgcagcttcaatgatttg |
41698722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 41699348 - 41699385
Alignment:
| Q |
158 |
tttgtgatttggttgtgggtttgcagcagtttctaatg |
195 |
Q |
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| T |
41699348 |
tttgtgatttggttgtgggtttgcagcggtttccaatg |
41699385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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