View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7993_high_2 (Length: 496)

Name: NF7993_high_2
Description: NF7993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7993_high_2
NF7993_high_2
[»] chr3 (9 HSPs)
chr3 (1-349)||(24982054-24982402)
chr3 (1-307)||(24497120-24497433)
chr3 (5-190)||(25085050-25085235)
chr3 (1-188)||(24923447-24923634)
chr3 (5-192)||(31825540-31825727)
chr3 (5-184)||(24919877-24920056)
chr3 (377-477)||(24982431-24982531)
chr3 (1-190)||(21584582-21584771)
chr3 (153-190)||(14858633-14858670)
[»] chr7 (4 HSPs)
chr7 (8-187)||(10575402-10575581)
chr7 (5-182)||(39954838-39955015)
chr7 (5-135)||(354416-354547)
chr7 (5-99)||(10580799-10580893)
[»] chr8 (1 HSPs)
chr8 (5-190)||(14261017-14261202)
[»] chr2 (1 HSPs)
chr2 (17-159)||(41027596-41027738)
[»] chr4 (3 HSPs)
chr4 (11-165)||(22898571-22898725)
chr4 (11-165)||(22950239-22950393)
chr4 (11-182)||(53328732-53328903)
[»] chr5 (1 HSPs)
chr5 (11-174)||(26358549-26358712)


Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 24982054 - 24982402
Alignment:
1 tgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcac 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24982054 tgttaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcac 24982153  T
101 gctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaagaagtaacacta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24982154 gctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaagaagtaacacta 24982253  T
201 tattctgttttatgctttaactgtgtaatttgaacatgtgattgttctttaatatgcttatttggattgttcctttgtaagtttcaacaagatttgaatc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
24982254 tattctgttttatgctttaactgtgtaatttgaacatgtgattgttctttaaaatgcttatttggattgttcctttgtaagtttcaacaagatttgaatc 24982353  T
301 taatgaattaaactgttctttaatattttctggtgaattatgattctac 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
24982354 taatgaattaaactgttctttaatattttctggtgaattatgattctac 24982402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 24497433 - 24497120
Alignment:
1 tgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcac 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
24497433 tgttaagagaatcagtggattgatctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtgatccgtgatgcagttacatacactgagcac 24497334  T
101 gctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaag------aagta 194  Q
    || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||      ||| |    
24497333 gcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggttttggaggttgatgaagaaaaacaagaa 24497234  T
195 acactatattctgttttatgc-tttaactgtgtaatttgaacatgtgattgttctttaatatgcttatttggattgttcctttgtaagtttcaacaagat 293  Q
     | || |  | ||| |||||| ||||||| ||| ||| |||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||    
24497233 gccctcttatgtgtattatgcttttaactttgttattagaacatgtaattgttctttaaaatgcttatttagattgttcctttgtaagtttcaacaagat 24497134  T
294 ttgaatctaatgaa 307  Q
    ||||||||||||||    
24497133 ttgaatctaatgaa 24497120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 25085050 - 25085235
Alignment:
5 aagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgcta 104  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
25085050 aagagaatcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgcaa 25085149  T
105 ggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaaga 190  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||    
25085150 ggaggaagactgtgacagccatggatgttgtctatgctttgaagagacagggaagaaccctctatggttttggaggttgaagaaga 25085235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 24923634 - 24923447
Alignment:
1 tgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||    
24923634 tgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgctgtgacatacactgagcac 24923535  T
101 gctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaa 188  Q
    || ||||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||    
24923534 gcaaggaggaagacagtgacagccatggatgttgtctatgctttgaagagacagggaagaaccctctatggatttggaggttgaagaa 24923447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 5 - 192
Target Start/End: Complemental strand, 31825727 - 31825540
Alignment:
5 aagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgcta 104  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
31825727 aagaggatcagtggtttgatctatgaagaaactagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcacgcta 31825628  T
105 ggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaagaag 192  Q
    |||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||| |||||||    
31825627 ggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttgatgaagaag 31825540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 24920056 - 24919877
Alignment:
5 aagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgcta 104  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||    
24920056 aagagaatcagcggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttagagaatgtcattcgtgatgctgtgacatacactgagcacgcta 24919957  T
105 ggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttga 184  Q
    |||||||||| || || ||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||| ||||||    
24919956 ggaggaagacagtgacagccatggatgtcgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttga 24919877  T

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Target: chr3; HSP #7
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 377 - 477
Target Start/End: Original strand, 24982431 - 24982531
Alignment:
377 aatcttatagaaaatcattttaattaaaattctgtggtctatagtttaggtatttgatccacaagtttaggagaaagattctgctgattatttaagcact 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24982431 aatcttatagaaaatcattttaattaaaattctgtggtctatagtttaggtatttgatccacaagtttaggagaaagattctgctgattatttaagcact 24982530  T
477 t 477  Q
    |    
24982531 t 24982531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 21584771 - 21584582
Alignment:
1 tgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcac 100  Q
    |||||||||||||||||||||||| ||||| ||||| ||||| ||  | ||||| |||||||||||||| || |||||||| ||||| |||||||||||     
21584771 tgttaagagaatcagtggtttgatttatgaggaaacaagaggagttcttaagattttcttggagaatgtgattcgtgatgcggttacgtacactgagcat 21584672  T
101 gctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaaga 190  Q
    || |||||||||||||| || || ||||||||||| |||||||||||||| ||||||||||| || ||||| ||||| ||||||||||||    
21584671 gcaaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgctttatggattcggaggttgaagaaga 21584582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 14858670 - 14858633
Alignment:
153 aaggaagaaccctctatggtttcggtggttgaagaaga 190  Q
    |||||||||||||||| ||||| |||||||||||||||    
14858670 aaggaagaaccctctacggttttggtggttgaagaaga 14858633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 7e-47; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 8 - 187
Target Start/End: Original strand, 10575402 - 10575581
Alignment:
8 agaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctagga 107  Q
    ||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||  | ||||| ||||| ||||||||||| || ||||    
10575402 agaatcagtggattgatctatgaggaaacaagaggtgtgttgaagatcttcttggagaatgttataagagatgctgttacttacactgagcatgcgagga 10575501  T
108 ggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaaga 187  Q
    |||| ||||| || || ||||||||||| || ||  | ||||||||||||||||||||||||||||||||||||||||||    
10575502 ggaaaactgtgactgctatggatgttgtttacgcgcttaagagacaaggaagaaccctctatggtttcggtggttgaaga 10575581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 5 - 182
Target Start/End: Complemental strand, 39955015 - 39954838
Alignment:
5 aagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgcta 104  Q
    ||||||||||| ||| | ||||| ||||| ||  | |||||  | ||||||||  | |||||||| || |||||||| ||||| ||||||||||| ||||    
39955015 aagagaatcagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgctgttacttacactgagcatgcta 39954916  T
105 ggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggtt 182  Q
    ||||||| ||||||||||||||||||||||| |||||| | ||||| || ||||| || ||||| |||||||||||||    
39954915 ggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtt 39954838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 135
Target Start/End: Original strand, 354416 - 354547
Alignment:
5 aagagaatcagtggtttga-tctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgct 103  Q
    ||||| ||||||||||| | ||||||| ||||  ||||| || |||||||| |||||| ||||||  ||  ||||||| ||||| ||||||||||| ||     
354416 aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcatgca 354515  T
104 aggaggaagactgttaccgccatggatgttgt 135  Q
    |||||||||||| | || || |||||||||||    
354516 aggaggaagactctgactgctatggatgttgt 354547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 10580799 - 10580893
Alignment:
5 aagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagca 99  Q
    ||||| |||||||||||||||||||| ||||  |||||  | |||||||| |||||| |||||   || | |||||| ||||| |||||||||||    
10580799 aagaggatcagtggtttgatctatgaggaaataagaggactgttgaagattttcttgcagaataagattcttgatgctgttacttacactgagca 10580893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 14261202 - 14261017
Alignment:
5 aagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgcta 104  Q
    ||||||||||| || ||||| |||||||||||  | ||||| |||||||| |||||||||||||| ||  | ||||| ||||| || ||||| || || |    
14261202 aagagaatcagcgggttgatttatgaagaaactcgcggtgtgttgaagattttcttggagaatgtgataagagatgctgttacgtatactgaacatgcga 14261103  T
105 ggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaaga 190  Q
    |||||||||| ||||| || ||||||||||| ||||| ||||||||||||||||| ||  | ||||||||||| ||||||||||||    
14261102 ggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggactttgtatggtttcggaggttgaagaaga 14261017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 41027596 - 41027738
Alignment:
17 ggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctaggaggaagactg 116  Q
    ||||||||||| ||||| ||  | || || ||||||||||| ||||||||||| || |||||||| ||||| ||||| |||||||||||||| |||||||    
41027596 ggtttgatctacgaagagacacgtggcgtgttgaagatctttttggagaatgttattcgtgatgctgttacttacacagagcacgctaggagaaagactg 41027695  T
117 ttaccgccatggatgttgtctatgctttgaagagacaaggaag 159  Q
    |||| || ||||||||||| ||||| |||||||||||||||||    
41027696 ttactgctatggatgttgtttatgcattgaagagacaaggaag 41027738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 22898571 - 22898725
Alignment:
11 atcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctaggagga 110  Q
    |||||||||||||| ||||| || ||  | || || |||||||| || ||||||||||| ||  | ||||| || || ||||||||||||||||| ||||    
22898571 atcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaagga 22898670  T
111 agactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccct 165  Q
    |||| ||||| || |||||||| || |||||  | |||||||| |||||||||||    
22898671 agacggttactgctatggatgtggtttatgccctcaagagacagggaagaaccct 22898725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 22950239 - 22950393
Alignment:
11 atcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctaggagga 110  Q
    |||||||||||||| ||||| || ||  | || || |||||||| || ||||||||||| ||  | ||||| || || ||||||||||||||||| ||||    
22950239 atcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaagga 22950338  T
111 agactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccct 165  Q
    |||| ||||| || |||||||| || |||||  | |||||||| |||||||||||    
22950339 agacggttactgctatggatgtggtttatgccctcaagagacagggaagaaccct 22950393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 53328732 - 53328903
Alignment:
11 atcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctaggagga 110  Q
    |||||||| || ||||||||||||||  | || ||  | ||||||||  | |||||||| || |||||||| || |||||||| ||||| ||| |  | |    
53328732 atcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgctgtcacatacacagagcatgctcgccgta 53328831  T
111 agactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggtt 182  Q
    |||||||||| || ||||||||||| || ||| | ||||| || ||||| || || || |||||||| ||||    
53328832 agactgttactgcaatggatgttgtttacgctctcaagaggcagggaaggactctttacggtttcgggggtt 53328903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 174
Target Start/End: Complemental strand, 26358712 - 26358549
Alignment:
11 atcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctaggagga 110  Q
    ||||||||| ||||||||||||||||  | |||||  | ||||| ||  | |||||||| || |||||||| || || |||||||| || ||| |  | |    
26358712 atcagtggtctgatctatgaagaaactcgtggtgttctcaagatatttcttgagaatgttattcgtgatgctgtcacttacactgaacatgctcgtcgca 26358613  T
111 agactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggttt 174  Q
    | || ||||| || ||||||||||| |||||  | ||||| |||||||| ||||| ||||||||    
26358612 aaacagttactgctatggatgttgtttatgcgctcaagaggcaaggaaggaccctttatggttt 26358549  T

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