View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7993_high_3 (Length: 365)

Name: NF7993_high_3
Description: NF7993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7993_high_3
NF7993_high_3
[»] chr7 (17 HSPs)
chr7 (43-228)||(10599716-10599901)
chr7 (43-232)||(14568350-14568539)
chr7 (74-232)||(41508093-41508251)
chr7 (150-232)||(42935447-42935529)
chr7 (43-129)||(10409789-10409877)
chr7 (79-225)||(14650104-14650247)
chr7 (74-176)||(14658771-14658873)
chr7 (79-162)||(13777702-13777786)
chr7 (74-232)||(20949066-20949223)
chr7 (152-224)||(17757486-17757558)
chr7 (91-220)||(46341502-46341631)
chr7 (137-224)||(37048576-37048663)
chr7 (195-232)||(17205122-17205159)
chr7 (41-119)||(42935834-42935913)
chr7 (183-228)||(29808443-29808488)
chr7 (90-230)||(12506703-12506843)
chr7 (74-126)||(45072515-45072567)
[»] chr1 (18 HSPs)
chr1 (74-232)||(17971359-17971517)
chr1 (43-232)||(32715686-32715874)
chr1 (43-231)||(27442338-27442525)
chr1 (45-231)||(28723932-28724117)
chr1 (74-231)||(3574720-3574879)
chr1 (74-217)||(13603078-13603224)
chr1 (83-232)||(36437205-36437354)
chr1 (43-119)||(45691567-45691643)
chr1 (74-228)||(9851810-9851963)
chr1 (83-221)||(39150187-39150324)
chr1 (43-232)||(28165091-28165280)
chr1 (74-159)||(42454869-42454954)
chr1 (83-232)||(42745537-42745685)
chr1 (74-224)||(31181048-31181199)
chr1 (142-228)||(17988348-17988434)
chr1 (74-229)||(31152431-31152584)
chr1 (195-229)||(31003698-31003732)
chr1 (74-227)||(46443700-46443851)
[»] chr2 (25 HSPs)
chr2 (43-227)||(14200333-14200516)
chr2 (43-225)||(7011095-7011274)
chr2 (43-220)||(32872346-32872523)
chr2 (74-220)||(31404951-31405096)
chr2 (74-232)||(38214106-38214264)
chr2 (74-231)||(39063591-39063748)
chr2 (74-232)||(40442711-40442869)
chr2 (74-232)||(40503868-40504026)
chr2 (74-228)||(38496470-38496624)
chr2 (74-159)||(44173636-44173721)
chr2 (44-214)||(2287486-2287654)
chr2 (74-232)||(3268791-3268949)
chr2 (74-232)||(3269350-3269508)
chr2 (74-232)||(3269909-3270067)
chr2 (131-214)||(34262721-34262803)
chr2 (43-126)||(34309311-34309394)
chr2 (44-214)||(2315509-2315677)
chr2 (90-231)||(16781256-16781396)
chr2 (74-224)||(4015785-4015934)
chr2 (74-231)||(40664228-40664386)
chr2 (43-164)||(45723883-45724004)
chr2 (134-232)||(3711895-3711992)
chr2 (74-147)||(21794914-21794988)
chr2 (195-232)||(21794849-21794886)
chr2 (180-231)||(35310800-35310852)
[»] chr8 (15 HSPs)
chr8 (43-232)||(38209485-38209674)
chr8 (43-232)||(36408151-36408339)
chr8 (83-232)||(36054809-36054958)
chr8 (43-172)||(5923871-5924004)
chr8 (74-232)||(8251229-8251387)
chr8 (74-231)||(31658847-31659003)
chr8 (74-231)||(2207766-2207921)
chr8 (74-176)||(2152369-2152472)
chr8 (74-231)||(16890265-16890425)
chr8 (74-229)||(1445349-1445504)
chr8 (74-147)||(30653628-30653701)
chr8 (178-232)||(21504882-21504936)
chr8 (137-230)||(30112485-30112578)
chr8 (137-173)||(4641095-4641131)
chr8 (196-231)||(35431579-35431614)
[»] chr4 (12 HSPs)
chr4 (43-224)||(25376810-25376991)
chr4 (83-232)||(18838745-18838893)
chr4 (131-231)||(54863918-54864018)
chr4 (126-224)||(21128097-21128195)
chr4 (43-175)||(25382400-25382531)
chr4 (74-176)||(31707349-31707448)
chr4 (83-226)||(16572251-16572391)
chr4 (137-230)||(33721675-33721768)
chr4 (94-231)||(34319546-34319682)
chr4 (137-232)||(44884411-44884507)
chr4 (75-232)||(42312399-42312564)
chr4 (150-224)||(47231644-47231718)
[»] chr3 (22 HSPs)
chr3 (43-232)||(30041272-30041460)
chr3 (44-172)||(35104722-35104850)
chr3 (137-220)||(49983561-49983644)
chr3 (74-232)||(41559980-41560132)
chr3 (74-164)||(43105144-43105234)
chr3 (74-232)||(45261357-45261512)
chr3 (74-232)||(40344929-40345085)
chr3 (83-224)||(22923629-22923773)
chr3 (43-147)||(49983786-49983892)
chr3 (61-192)||(30577821-30577952)
chr3 (154-224)||(43105935-43106004)
chr3 (74-230)||(17003574-17003729)
chr3 (122-231)||(32211834-32211943)
chr3 (61-228)||(24650120-24650285)
chr3 (74-231)||(8825356-8825511)
chr3 (95-232)||(38854607-38854744)
chr3 (110-223)||(25295085-25295198)
chr3 (83-232)||(46918469-46918617)
chr3 (74-231)||(35455302-35455455)
chr3 (90-199)||(49787770-49787879)
chr3 (140-232)||(43320194-43320286)
chr3 (74-128)||(42279233-42279287)
[»] chr6 (8 HSPs)
chr6 (43-214)||(9425503-9425675)
chr6 (74-217)||(6657887-6658029)
chr6 (43-232)||(19780224-19780413)
chr6 (74-231)||(180334-180491)
chr6 (74-187)||(34837147-34837260)
chr6 (83-232)||(606623-606772)
chr6 (137-224)||(1856752-1856839)
chr6 (74-129)||(12143716-12143771)
[»] scaffold0015 (1 HSPs)
scaffold0015 (46-232)||(38802-38987)
[»] scaffold0006 (1 HSPs)
scaffold0006 (74-217)||(131735-131881)
[»] scaffold0836 (1 HSPs)
scaffold0836 (83-232)||(3015-3164)
[»] scaffold1809 (1 HSPs)
scaffold1809 (83-231)||(503-651)
[»] scaffold0088 (1 HSPs)
scaffold0088 (74-232)||(51266-51424)
[»] chr5 (13 HSPs)
chr5 (74-170)||(11691056-11691152)
chr5 (83-227)||(27193009-27193153)
chr5 (79-225)||(17693562-17693705)
chr5 (180-228)||(1962962-1963010)
chr5 (119-222)||(3257251-3257354)
chr5 (90-230)||(6688782-6688924)
chr5 (74-232)||(18704992-18705150)
chr5 (83-228)||(3629215-3629360)
chr5 (73-224)||(17686233-17686384)
chr5 (83-186)||(2225619-2225722)
chr5 (110-205)||(11983614-11983709)
chr5 (197-232)||(23010685-23010720)
chr5 (83-159)||(14917792-14917865)
[»] scaffold0024 (1 HSPs)
scaffold0024 (76-232)||(154333-154489)


Alignment Details
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 43 - 228
Target Start/End: Original strand, 10599716 - 10599901
Alignment:
Q  43 aaaaccaagacaatgataagttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaa 142  Q
    |||||||||||| |||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10599716 aaaaccaagacattgattagttgttgcaatgttttgaatgattttacaaatataccctcataaaattttgtgaagtattaaatatacacactattattaa 10599815  T
Q  143 aaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggac 228  Q
    ||||||||||||||||||| |||||||||||| | |||||||||||||||| || |||||||||||||||||||||||||||||||    
T  10599816 aaagataaacattaaatgaaggttagaaaagtttttcaaacaataaatgtacctcaaaagttgtgactttttcttataaataggac 10599901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 43 - 232
Target Start/End: Complemental strand, 14568539 - 14568350
Alignment:
Q  43 aaaaccaagacaatgataagttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaa 142  Q
    |||||||||||||| || |||| ||| ||| ||||||||||||||| ||||||||| |  || || ||| ||||||||| ||||||| ||||| | || |    
T  14568539 aaaaccaagacaatcattagttattgtaatattttgaatgtttttacaaatataccgtattataaatttttgaagtattcaatatacccactaattttga 14568440  T
Q  143 aaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    ||||| |||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||  ||||||||||||| |||||||||||    
T  14568439 aaagagaaacattaaatgagggttagaaaagtcttttaaacaataaatatatcttaaaagttgaaactttttcttatatataggaccaaa 14568350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 74 - 232
Target Start/End: Complemental strand, 41508251 - 41508093
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    ||||||||||||||| ||||||||||||||||||  |||||||| |||||||| || ||||| ||||||||||| ||||||||||| |||| || |||||    
T  41508251 ttttgaatgtttttacaaatataccctcataaaaaattgtgaagcattaaatacacccactaatattaaaaagacaaacattaaataaggggtaaaaaag 41508152  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    ||| | || |||||| |  | ||||||| ||||||  ||||||||||  ||||||||||    
T  41508151 tcttttaagcaataactacaccttaaaaattgtgatattttcttatatttaggaccaaa 41508093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 232
Target Start/End: Complemental strand, 42935529 - 42935447
Alignment:
Q  150 aacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    |||||||||||||  |||||||| ||| | ||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  42935529 aacattaaatgagaattagaaaaatcttttaaacaataaatgtatctcaaaagttgtgactttttcttataaatagaaccaaa 42935447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 10409877 - 10409789
Alignment:
Q  43 aaaaccaagacaatgataagttgttgcaatgtttt--gaatgtttttataaatataccctcataaaattttgtgaagtattaaatatac 129  Q
    |||||||| ||||| || |||||||||||| ||||  |||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  10409877 aaaaccaaaacaatcattagttgttgcaattttttttgaatgtttttataaatataccctcttaaaaatttgtgaagtattaaatatac 10409789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 79 - 225
Target Start/End: Original strand, 14650104 - 14650247
Alignment:
Q  79 aatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagg-gttagaaaagtctg 177  Q
    |||||||||| |||||||||||| ||||||||| ||||||    ||||||  ||||| |||||||| |||||||||| |||||||  | | ||||||||     
T  14650104 aatgtttttacaaatataccctcgtaaaattttatgaagt----aatatatccactagtattaaaatgataaacattgaatgaggactaaaaaaagtctt 14650199  T
Q  178 tcaaacaataaatgtatcttaaaagttgtgactttttcttataaatag 225  Q
    | |  ||||||||  ||||||||| ||||||| |||||||||||||||    
T  14650200 ttatgcaataaatacatcttaaaaattgtgacattttcttataaatag 14650247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 14658771 - 14658873
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||| |||||||||| ||||||||||||||||||   | |||||||||||||||   ||||| |||||||||||||||||||||| |||| ||  |||||    
T  14658771 ttttaaatgtttttacaaatataccctcataaaaacatatgaagtattaaatatttccactagtattaaaaagataaacattaaacgaggattgaaaaag 14658870  T
Q  174 tct 176  Q
    |||    
T  14658871 tct 14658873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 13777786 - 13777702
Alignment:
Q  79 aatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactatta-ttaaaaagataaacattaaatgag 162  Q
    |||||||||||||||||||  |||||||| |||||||||||||||||||||  |||| || ||||||||| ||| ||||||||||    
T  13777786 aatgtttttataaatatacgttcataaaaatttgtgaagtattaaatatacttactaatacttaaaaagacaaatattaaatgag 13777702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 232
Target Start/End: Complemental strand, 20949223 - 20949066
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||| ||| |||||| ||||||||||||||||||  |||||||  |||||||| ||| |||| |||| |||||| | ||||||||| |||| || ||||     
T  20949223 ttttaaatatttttacaaatataccctcataaaaaattgtgaaacattaaatacacatactaatattcaaaagagagacattaaat-agggataaaaaaa 20949125  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    ||  | || |||||| |  | |||||||||| |||| ||||||||||||||| ||||||    
T  20949124 tcatttaagcaataactacaccttaaaagttatgacattttcttataaatagaaccaaa 20949066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 17757486 - 17757558
Alignment:
Q  152 cattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaata 224  Q
    |||||||| ||||||| ||| |||| | || ||||||||||| ||||||||||||| ||||||||||||||||    
T  17757486 cattaaattagggttaaaaatgtcttttaagcaataaatgtaccttaaaagttgtgtctttttcttataaata 17757558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 46341631 - 46341502
Alignment:
Q  91 aatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaat 190  Q
    ||||||||||| |||||  |||||||| |||||||| || ||||||||| ||||| | ||||| ||||| || | |||| |||||| | || |||||| |    
T  46341631 aatataccctcgtaaaaagttgtgaagcattaaatacacccactattatcaaaaacaaaaacaataaataagtggtagagaagtcttttaagcaataact 46341532  T
Q  191 gtatcttaaaagttgtgactttttcttata 220  Q
      | ||||||||||||||  ||||||||||    
T  46341531 acaccttaaaagttgtgatattttcttata 46341502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 37048663 - 37048576
Alignment:
Q  137 tattaaaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaata 224  Q
    ||||||||||||||||||||||| | || ||||||||||| | ||||||| | |  |  |||||||||||||  ||||||||||||||    
T  37048663 tattaaaaagataaacattaaataaagggtagaaaagtcttttaaacaatcactacactttaaaagttgtgatattttcttataaata 37048576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 17205159 - 17205122
Alignment:
Q  195 cttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  17205159 cttaaaagttgtgacattttcttataaataggaccaaa 17205122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 42935913 - 42935834
Alignment:
Q  41 caaaaaccaagacaatgataagttgttgcaatgttttga-atgtttttataaatataccctcataaaattttgtgaagta 119  Q
    |||||| ||||||||| || |||||||||||| ||||   ||||||||| |||||||||||| |||||  ||||||||||    
T  42935913 caaaaatcaagacaatcattagttgttgcaattttttttcatgtttttacaaatataccctcttaaaaacttgtgaagta 42935834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 29808488 - 29808443
Alignment:
Q  183 caataaatgtatcttaaaagttgtgactttttcttataaataggac 228  Q
    ||||||||| | | ||||||||||| ||||||||||||||||||||    
T  29808488 caataaatgcaccgtaaaagttgtggctttttcttataaataggac 29808443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 230
Target Start/End: Complemental strand, 12506843 - 12506703
Alignment:
Q  90 aaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaa 189  Q
    ||||||||||||||||||  |||||||  | |||||| ||  |||   |||||||| | | ||||||||| |||| ||||||||||| |  ||||||||     
T  12506843 aaatataccctcataaaaaattgtgaaacaataaatacacttactgagattaaaaacaaacacattaaataagggatagaaaagtcttttgaacaataac 12506744  T
Q  190 tgtatcttaaaagttgtgactttttcttataaataggacca 230  Q
    |  | |||||||||||| |  ||||||||||  ||||||||    
T  12506743 tacaccttaaaagttgtaatattttcttatatttaggacca 12506703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 45072515 - 45072567
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaata 126  Q
    |||||||| ||||||||||||||| |||||||||   ||||||| ||||||||    
T  45072515 ttttgaatatttttataaatatactctcataaaaaactgtgaagcattaaata 45072567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 74 - 232
Target Start/End: Original strand, 17971359 - 17971517
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    ||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| |||| ||||||  ||||||||||||||||||||||||    
T  17971359 ttttgaatgtttttacaaatataccctcttaaaaatttgtgaagtattaaatatacacactaatattgaaaagaccaacattaaatgagggttagaaaag 17971458  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    ||| | ||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  17971459 tcttttaaacaataaatataccttaaaagttgtgactttttcttataaataggaccaaa 17971517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 43 - 232
Target Start/End: Complemental strand, 32715874 - 32715686
Alignment:
Q  43 aaaaccaagacaatgataagttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaa 142  Q
    |||||||||||||| || |||||||| ||| ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||| ||||| |||| |    
T  32715874 aaaaccaagacaatcattagttgttgtaattttttgaatgtttttacaaatatatcctcataaaaatttgtgaagtattaaatatacccactaatattga 32715775  T
Q  143 aaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    |||||| ||||||||||||||| |||||||| || | |||||||||||| | ||||||| ||||||||||||||||||||||||||||||    
T  32715774 aaagatcaacattaaatgagggctagaaaagacttttaaacaataaatg-accttaaaatttgtgactttttcttataaataggaccaaa 32715686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 43 - 231
Target Start/End: Original strand, 27442338 - 27442525
Alignment:
Q  43 aaaaccaagacaatgataagttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaa 142  Q
    |||||||||||||| || |||||||||||| ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||| || || ||||      
T  27442338 aaaaccaagacaatcattagttgttgcaattttttgaatgtttttacaaatatatcctcataaaaatttgtgaagtattaaatatacccattaatatt-g 27442436  T
Q  143 aaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaa 231  Q
    |||||  ||||||||||||||||||||||||||| | ||||| ||||| ||  ||||||||||||| ||||||||||||||||||||||    
T  27442437 aaagaccaacattaaatgagggttagaaaagtcttttaaacactaaatatactttaaaagttgtgattttttcttataaataggaccaa 27442525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 45 - 231
Target Start/End: Original strand, 28723932 - 28724117
Alignment:
Q  45 aaccaagacaatgataagttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaa 144  Q
    |||||||||||| || ||  |||| ||| ||||||||| ||||| | |||||||||||||||| ||||||||||||||||||||  ||||| ||||||||    
T  28723932 aaccaagacaatcattagcggttgtaattttttgaatgcttttacagatataccctcataaaaatttgtgaagtattaaatataaccactaatattaaaa 28724031  T
Q  145 agataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaa 231  Q
    ||||||||||||| |||||||||||||||||| | ||| |||||||| | | | |||||||||||||||||||||| || |||||||    
T  28724032 agataaacattaattgagggttagaaaagtcttttaaataataaatgca-cattaaagttgtgactttttcttatatattggaccaa 28724117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 74 - 231
Target Start/End: Complemental strand, 3574879 - 3574720
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaat--atacacactattattaaaaagataaacattaaatgagggttagaaa 171  Q
    |||||||||||||||||||||||| || ||||||  ||||||| ||||||||  || || | || |||||||| ||||||||||||||||||| |||| |    
T  3574879 ttttgaatgtttttataaatatactcttataaaaaattgtgaaatattaaatacattcaaattaatattaaaatgataaacattaaatgaggggtagaca 3574780  T
Q  172 agtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaa 231  Q
    | | | | ||||||||| |  || | |||||||||||| |||||||||||||||||||||    
T  3574779 aattttttaaacaataactacatttgaaaagttgtgacattttcttataaataggaccaa 3574720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 217
Target Start/End: Complemental strand, 13603224 - 13603078
Alignment:
Q  74 ttttgaatgttttt-ataaatataccctcataaaattttgtgaagt---attaaatatacacactattattaaaaagataaacattaaatgagggttaga 169  Q
    |||||||||||||| | |||||||||||||||||| ||||||||||   ||||||||||  ||||| ||||||||||| |||| || | ||| |||||||    
T  13603224 ttttgaatgttttttacaaatataccctcataaaaatttgtgaagtattattaaatataaccactaatattaaaaagacaaacttttattgaaggttaga 13603125  T
Q  170 aaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttctt 217  Q
    ||||||| |  ||||||||||| | ||| |||||||||||||||||||    
T  13603124 aaagtcttttgaacaataaatgcacctt-aaagttgtgactttttctt 13603078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 83 - 232
Target Start/End: Original strand, 36437205 - 36437354
Alignment:
Q  83 tttttataaatataccctcataaaattttgtgaagtattaaatata-cacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaa 181  Q
    |||||| ||||||||||| ||| ||| |||||||  |||||||| | | ||||| ||||||||||| | |||||||||||||| || |||||||| | ||    
T  36437205 tttttacaaatatacccttatagaatgttgtgaaacattaaatacatcccactaatattaaaaagacagacattaaatgagggataaaaaagtcttttaa 36437304  T
Q  182 acaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
     |||||| | |  ||||||||||||||| ||||||||||||||||||||||    
T  36437305 gcaataactatc-cttaaaagttgtgacattttcttataaataggaccaaa 36437354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 45691567 - 45691643
Alignment:
Q  43 aaaaccaagacaatgataagttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagta 119  Q
    |||||||||||||| || |||||||| ||| |||||||| |||||| |||||||||||||||||| |||||||||||    
T  45691567 aaaaccaagacaattattagttgttgtaattttttgaatatttttacaaatataccctcataaaaatttgtgaagta 45691643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 74 - 228
Target Start/End: Original strand, 9851810 - 9851963
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| |||||| ||||||||| | |||||||  ||||||  ||||||||||| ||||| |||| |||||| ||||||||||| |||| || ||| |    
T  9851810 ttttgaatatttttacaaatatacctttataaaatactgtgaaacattaaatatacccactaatatttaaaagagaaacattaaat-agggataaaaagg 9851908  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggac 228  Q
    ||  | || |||||| |  |  |||||||||||||| ||||||||||||||||||    
T  9851909 tcatttaagcaataactacactttaaaagttgtgacattttcttataaataggac 9851963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 83 - 221
Target Start/End: Original strand, 39150187 - 39150324
Alignment:
Q  83 tttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaa 182  Q
    |||||| |||||||||||||||||| || |||||| |||||||| || || || ||||||||| | ||||||||||| |||| ||||||||||| | ||     
T  39150187 tttttacaaatataccctcataaaagtt-gtgaagcattaaatacactcattaatattaaaaacaaaaacattaaataaggggtagaaaagtcttttaag 39150285  T
Q  183 caataaatgtatcttaaaagttgtgactttttcttataa 221  Q
    |||||| |  | ||||||||| ||||  |||||||||||    
T  39150286 caataactacaccttaaaagtagtgatattttcttataa 39150324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 43 - 232
Target Start/End: Original strand, 28165091 - 28165280
Alignment:
Q  43 aaaaccaagacaatgataagttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaa 142  Q
    |||||||| ||||| || | || ||| ||| |||||||| |||||| ||||||||||| ||||||  |||||||  |||||||| |   || | ||||||    
T  28165091 aaaaccaatacaatcatcaattattgtaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctaccaatattaa 28165190  T
Q  143 aaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    ||||||||| | | |||||||| || |||| ||| | || |||||| | || ||| ||||||||||| |||| |||||||||| ||||||    
T  28165191 aaagataaagacttaatgaggggtaaaaaaatcttttaagcaataactatacctttaaagttgtgacattttattataaatagaaccaaa 28165280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 42454869 - 42454954
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaat 159  Q
    |||||||| |||||||||||||||||||||||||  || ||||| |||||||| || ||||| ||||||||||| |||| ||||||    
T  42454869 ttttgaatatttttataaatataccctcataaaaaattatgaagcattaaatacactcactaatattaaaaagacaaacgttaaat 42454954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 83 - 232
Target Start/End: Complemental strand, 42745685 - 42745537
Alignment:
Q  83 tttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaa 182  Q
    |||||| ||||||||||| ||| ||| |||||||  |||||||| |  ||||| ||||||||||  || | ||||||||||| || |||||| | | |||    
T  42745685 tttttacaaatatacccttatagaatgttgtgaaacattaaatacatccactaatattaaaaaggcaatccttaaatgagggata-aaaagtattttaaa 42745587  T
Q  183 caataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    |||||| | ||  | |||| ||||||| ||||||||||||||||||||||    
T  42745586 caataattatacttcaaaaattgtgacattttcttataaataggaccaaa 42745537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 224
Target Start/End: Original strand, 31181048 - 31181199
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaa-cattaaatgagggttagaaaa 172  Q
    |||||||| |||||| || |||||||| ||| ||  |||||||  |||||||| || | ||| ||||||||| | ||| |||||||||| |  || ||||    
T  31181048 ttttgaatatttttacaagtatacccttatagaaaattgtgaaacattaaatacactcgctaatattaaaaaaaaaaaacattaaatgaagtgtaaaaaa 31181147  T
Q  173 gtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaata 224  Q
    |||| | ||||||||| | ||  |||||||||||||| ||||||||||||||    
T  31181148 gtcttttaaacaataactataagttaaaagttgtgacattttcttataaata 31181199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 17988348 - 17988434
Alignment:
Q  142 aaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggac 228  Q
    |||||| || |||||||| |||| || |||||||| | ||||||||| |  | ||||||||||||||| ||||||||||| ||||||    
T  17988348 aaaagagaagcattaaataaggggtaaaaaagtcttttaaacaataactacaccttaaaagttgtgacattttcttataagtaggac 17988434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 31152584 - 31152431
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| |||||| |||||||| ||||||||| |  |||||  ||||||||    ||||| |||||||| || |||||||||||||||| ||| ||||    
T  31152584 ttttgaatatttttacaaatatacgctcataaaaat--gtgaaacattaaatacgttcactaatattaaaa-gagaaacattaaatgaggggtagcaaag 31152488  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtga-ctttttcttataaataggacc 229  Q
    ||| | || ||||||    ||||||||||||||||  ||| | ||||||||||||||    
T  31152487 tcttttaagcaataacgacatcttaaaagttgtgatatttcttttataaataggacc 31152431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 229
Target Start/End: Original strand, 31003698 - 31003732
Alignment:
Q  195 cttaaaagttgtgactttttcttataaataggacc 229  Q
    ||||||||||||||| |||||||||||||||||||    
T  31003698 cttaaaagttgtgacattttcttataaataggacc 31003732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 227
Target Start/End: Complemental strand, 46443851 - 46443700
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| |||||| |||||||||| ||||||| || |||||  |||| ||| |  |||||  |||||||||| ||  || ||||||||| || |||||    
T  46443851 ttttgaatatttttacaaatatacccacataaaaatt-gtgaaacattatatacattcactaacattaaaaagagaactat-aaatgagggataaaaaag 46443754  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaatagga 227  Q
    | | | ||  ||||| |  | ||||||||||||||| |||||||||||||||||    
T  46443753 ttttttaagtaataattacaccttaaaagttgtgacgttttcttataaatagga 46443700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 9e-55; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 43 - 227
Target Start/End: Original strand, 14200333 - 14200516
Alignment:
Q  43 aaaaccaagacaatgataagttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaa 142  Q
    |||||||||||||| || |||| |   ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||| |||| |    
T  14200333 aaaaccaagacaatcattagttatcctaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatatactcactaatattga 14200432  T
Q  143 aaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaatagga 227  Q
    |||||| |||||||||||||||||| |||||||| | ||| |||||||||||||||||||||||||| |||||||||||||||||    
T  14200433 aaagatcaacattaaatgagggttaaaaaagtcttttaaataataaatgtatcttaaaagttgtgac-ttttcttataaatagga 14200516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 43 - 225
Target Start/End: Complemental strand, 7011274 - 7011095
Alignment:
Q  43 aaaaccaagacaatgataagttgttgcaatgtttt-gaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattatta 141  Q
    |||| ||||||||| |  |||||||||||| |||| ||||||||||| |||||||| ||||||||| ||||||||||||||||||||| ||||| ||||     
T  7011274 aaaatcaagacaatcagtagttgttgcaatttttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatacccactaatattg 7011175  T
Q  142 aaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaatag 225  Q
    ||||||||    ||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||    
T  7011174 aaaagata----ttaaatgagggttagaaaagtcttttaaacaataaatgtatcttaaaaattgtgactttttcttataaatag 7011095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 43 - 220
Target Start/End: Complemental strand, 32872523 - 32872346
Alignment:
Q  43 aaaaccaagacaatgataagttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaa 142  Q
    |||||||||||||| || ||| |||| ||| ||||||||||||||| ||||||||||||||||||  |||||||||||||||||||| ||||| ||||||    
T  32872523 aaaaccaagacaatcattagtggttgtaattttttgaatgtttttacaaatataccctcataaaaaattgtgaagtattaaatatacccactaatattaa 32872424  T
Q  143 aaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttata 220  Q
    || || ||||||||||| |||||| ||||||||| | |||||||||||||| |||||||||    |||||||||||||    
T  32872423 aaggacaaacattaaattagggttggaaaagtcttttaaacaataaatgtaacttaaaagtcacaactttttcttata 32872346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 74 - 220
Target Start/End: Complemental strand, 31405096 - 31404951
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| |||||| ||||||| ||||||| || ||| ||||||||||||||||  ||||| ||||||||||| ||| |||||||||||||||||||||    
T  31405096 ttttgaatatttttacaaatatatcctcatagaaatttatgaagtattaaatatatgcactaatattaaaaagacaaatattaaatgagggttagaaaag 31404997  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttata 220  Q
    ||| | ||| |||||||||| |||||||  | |||||||||||||||    
T  31404996 tcttttaaaaaataaatgtaccttaaaa-atatgactttttcttata 31404951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 74 - 232
Target Start/End: Complemental strand, 38214264 - 38214106
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| |||||| ||||||| ||||||||||  |||||||  |||||||| ||| |||| ||||||||||| ||  |||||||||||| || |||||    
T  38214264 ttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaatacacatactaatattaaaaagagaagtattaaatgagggatataaaag 38214165  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    ||| | |||||||||||  | |||||||||||||| |||||||||||||| ||||||||    
T  38214164 tcttttaaacaataaatacaccttaaaagttgtgaatttttcttataaattggaccaaa 38214106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 74 - 231
Target Start/End: Original strand, 39063591 - 39063748
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| |||||| ||||||| ||||||||||  |||||||  |||||||| |||||||| ||||||||||| ||  ||||||||||   || |||||    
T  39063591 ttttgaatatttttacaaatataacctcataaaaaattgtgaaacattaaatacacacactaatattaaaaagagaagtattaaatgagcaatataaaag 39063690  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaa 231  Q
    ||| | |||||||||||  | |||||||||||||| |||||||||||||| |||||||    
T  39063691 tcttttaaacaataaatacaccttaaaagttgtgaatttttcttataaattggaccaa 39063748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 74 - 232
Target Start/End: Complemental strand, 40442869 - 40442711
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| |||||||| ||||||||| ||||||  |||||||| |||||||  ||  |||| ||||||||||||||||| ||||| |||| || |||||    
T  40442869 ttttgaatatttttatagatatacccttataaaaagttgtgaagcattaaatgcacctactaatattaaaaagataaacaataaataaggggtataaaag 40442770  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    | | | ||||||||| |  | ||||||||||||||| ||||||||||||||||| ||||    
T  40442769 ttttttaaacaataattacaccttaaaagttgtgacattttcttataaataggatcaaa 40442711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 74 - 232
Target Start/End: Complemental strand, 40504026 - 40503868
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| |||||| | ||||||||||||||||  |||||||| |||||||  ||  |||| ||||||||||| ||||| ||||| |||| || |||||    
T  40504026 ttttgaatatttttacagatataccctcataaaaagttgtgaagcattaaatgcacctactaatattaaaaagacaaacaataaataaggggtataaaag 40503927  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    | | | ||||||||| |  | ||||||||||||||| ||||||||||||| ||||||||    
T  40503926 ttttttaaacaataattacaccttaaaagttgtgacattttcttataaatgggaccaaa 40503868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 74 - 228
Target Start/End: Complemental strand, 38496624 - 38496470
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| |||||| ||||||||||| |||||| | || |||  |||||||| ||  |||| ||||||||| | |||| |||||| |||| |||||| |    
T  38496624 ttttgaatatttttacaaatataccctgataaaaatgtgcgaaacattaaatacacctactaatattaaaaatacaaacgttaaataaggggtagaaagg 38496525  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggac 228  Q
    ||| | ||||||||| | || ||||||| || |||| ||||||||||||||||||    
T  38496524 tcttttaaacaataactataccttaaaaattctgacattttcttataaataggac 38496470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 44173636 - 44173721
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaat 159  Q
    |||| |||||||||| ||||||||||||  |||||||||| ||||||||| ||||  ||||| |||||||||||||||||||||||    
T  44173636 ttttaaatgtttttagaaatataccctcggaaaattttgtaaagtattaactatattcactaatattaaaaagataaacattaaat 44173721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 44 - 214
Target Start/End: Original strand, 2287486 - 2287654
Alignment:
Q  44 aaaccaagacaatgataagttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaa 143  Q
    ||||||||||||| || | | |||||||  |||||||||||||||||| |||||  ||||  || ||||| || ||||||||||||  |||| |||||||    
T  2287486 aaaccaagacaataattaatagttgcaacattttgaatgtttttataattatactttcatcgaaatttgtaaaatattaaatatac-tactaatattaaa 2287584  T
Q  144 aagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgacttttt 214  Q
    || | ||| |||||| || ||||| |||||||| | ||  ||||||| ||| |||||||||||||||||||    
T  2287585 aaaaaaaatattaaacgaaggtta-aaaagtcttttaacaaataaatatattttaaaagttgtgacttttt 2287654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 74 - 232
Target Start/End: Complemental strand, 3268949 - 3268791
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| |||||| ||||||||||| ||||||  ||||||||  ||||||| ||  | || ||||||||| | ||||||||||| |||| ||||||||    
T  3268949 ttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaaataaggggtagaaaag 3268850  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    ||| | |  |||||| |  | ||||||||||||||  ||||||||||| | ||||||||    
T  3268849 tcttttaggcaataactacaccttaaaagttgtgatattttcttataatttggaccaaa 3268791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 74 - 232
Target Start/End: Complemental strand, 3269508 - 3269350
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| |||||| ||||||||||| ||||||  ||||||||  ||||||| ||  | || ||||||||| | ||||||||||| |||| ||||||||    
T  3269508 ttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaaataaggggtagaaaag 3269409  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    ||| | |  |||||| |  | ||||||||||||||  ||||||||||| | ||||||||    
T  3269408 tcttttaggcaataactacaccttaaaagttgtgatattttcttataatttggaccaaa 3269350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 74 - 232
Target Start/End: Complemental strand, 3270067 - 3269909
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| |||||| ||||||||||| ||||||  ||||||||  ||||||| ||  | || ||||||||| | ||||||||||| |||| ||||||||    
T  3270067 ttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaaataaggggtagaaaag 3269968  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    ||| | |  |||||| |  | ||||||||||||||  ||||||||||| | ||||||||    
T  3269967 tcttttaggcaataactacaccttaaaagttgtgatattttcttataatttggaccaaa 3269909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 34262803 - 34262721
Alignment:
Q  131 cactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgacttttt 214  Q
    ||||| ||||||||||| ||||||||| |||||||||||||||||| | |||||||||||| | ||||||| |||| |||||||    
T  34262803 cactaatattaaaaagacaaacattaattgagggttagaaaagtcttttaaacaataaatgaaccttaaaa-ttgttacttttt 34262721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 34309394 - 34309311
Alignment:
Q  43 aaaaccaagacaatgataagttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaata 126  Q
    |||| ||||||||| || |||  ||| ||| ||||||||| ||||| |||||||||||||||||| ||||||||||||||||||    
T  34309394 aaaatcaagacaatcattagtgattgtaattttttgaatgcttttacaaatataccctcataaaaatttgtgaagtattaaata 34309311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 214
Target Start/End: Original strand, 2315509 - 2315677
Alignment:
Q  44 aaaccaagacaatgataagttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaa 143  Q
    ||||||||||||| || | | |||||||  |||||||||||||||||| |||||  ||||  || ||||| || ||||||||||||  | || |||||||    
T  2315509 aaaccaagacaataattaatagttgcaacattttgaatgtttttataattatactttcatcgaaatttgtaaaatattaaatatac-tattaatattaaa 2315607  T
Q  144 aagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgacttttt 214  Q
    |||| ||| |||||| || ||||| |||||||| | ||  ||||||| ||| ||| |||||||||||||||    
T  2315608 aagagaaatattaaacgaaggtta-aaaagtcttttaactaataaatatattttataagttgtgacttttt 2315677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 90 - 231
Target Start/End: Complemental strand, 16781396 - 16781256
Alignment:
Q  90 aaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaa 189  Q
    |||||||||||||| |||  | |||||  |||||||| ||  |||| ||||| ||||| ||||||||| | |||  ||||||||||| | ||||| |||     
T  16781396 aaatataccctcattaaaaatggtgaaacattaaatacacctactaatattacaaagacaaacattaactaaggcgtagaaaagtcttttaaacattaat 16781297  T
Q  190 tgtatcttaaaagttgtgactttttcttataaataggaccaa 231  Q
    | || |||||| ||||||||||||||||||||||| ||||||    
T  16781296 tataccttaaa-gttgtgactttttcttataaatatgaccaa 16781256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 224
Target Start/End: Original strand, 4015785 - 4015934
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    ||||||||  || ||||||||||||||| | |||  || ||||  |||||||  ||  |||| ||||| ||||| ||||||||| | |||| ||||||||    
T  4015785 ttttgaataattatataaatataccctcgttaaaaattatgaaacattaaatgcacctactaatattacaaagacaaacattaactaaggggtagaaaag 4015884  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaata 224  Q
    ||| | ||||| ||| | ||||||| | |||||||||||||||||||||||    
T  4015885 tcttttaaacattaactatatcttaga-gttgtgactttttcttataaata 4015934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 231
Target Start/End: Complemental strand, 40664386 - 40664228
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaa-gataaacattaaatgagggttagaaaa 172  Q
    |||||||| || ||| |||||||||||| |||||  |||||||  |||||||| |||||| | | ||||||| || || ||||||||||||| || ||||    
T  40664386 ttttgaatattcttacaaatataccctcgtaaaaaattgtgaaacattaaatacacacaccaatgttaaaaaagagaagcattaaatgagggatataaaa 40664287  T
Q  173 gtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaa 231  Q
    |||| | ||| |||||||  |  |||| ||||||||  ||||||||| ||| |||||||    
T  40664286 gtcttttaaataataaatacactttaagagttgtgaaattttcttatcaattggaccaa 40664228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 164
Target Start/End: Original strand, 45723883 - 45724004
Alignment:
Q  43 aaaaccaagacaatgataagttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaa 142  Q
    |||||||| ||||| || ||||| |  ||| ||||||||||| ||| ||||||| | |||||||| ||| | |||||||||||||||  |||| |||| |    
T  45723883 aaaaccaaaacaatcattagttgctctaattttttgaatgttgttacaaatatatcttcataaaaatttataaagtattaaatatacctactaatattga 45723982  T
Q  143 aaagataaacattaaatgaggg 164  Q
    |||||  || ||||||||||||    
T  45723983 aaagaccaatattaaatgaggg 45724004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 232
Target Start/End: Original strand, 3711895 - 3711992
Alignment:
Q  134 tattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    |||| ||| ||||||| ||||||||| || | || |||||||| | ||||||||| | |  ||||||||||||||| ||||||||||||||| ||||||    
T  3711895 tatttttacaaagatatacattaaataagcgataaaaaagtcttttaaacaataactatc-cttaaaagttgtgacattttcttataaatagaaccaaa 3711992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 21794988 - 21794914
Alignment:
Q  74 ttttgaatgtttttataaatataccctcat-aaaattttgtgaagtattaaatatacacactattattaaaaaga 147  Q
    |||||||| |||||| |||||||||||||| ||||  |||||||  |||||||| |||||||| |||||||||||    
T  21794988 ttttgaatatttttacaaatataccctcataaaaaaattgtgaaacattaaatacacacactaatattaaaaaga 21794914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 21794886 - 21794849
Alignment:
Q  195 cttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  21794886 cttaaaagttgtgaatttttcttataaattggaccaaa 21794849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 35310852 - 35310800
Alignment:
Q  180 aaacaataaatgtatcttaaaagttgt-gactttttcttataaataggaccaa 231  Q
    ||||||||||| |||||||||||| || || |||||||||||||||| |||||    
T  35310852 aaacaataaatatatcttaaaagtagtggattttttcttataaatagaaccaa 35310800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 43 - 232
Target Start/End: Original strand, 38209485 - 38209674
Alignment:
Q  43 aaaaccaagacaatgataagttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaa 142  Q
    |||||||||| ||| || | |||||| ||| |||| ||| ||||||||||||||||||  ||||| ||||||||||||| ||||||| ||||| |||| |    
T  38209485 aaaaccaagataatcattacttgttgaaattttttaaatatttttataaatatacccttttaaaaatttgtgaagtatttaatatacccactaatattga 38209584  T
Q  143 aaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    |||||  |||||||||||||||||||| |||||| | |||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  38209585 aaagaccaacattaaatgagggttagagaagtcttttaaacaataaatgtaccttaaaagttgtgactttttcttataaatatgaccaaa 38209674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 43 - 232
Target Start/End: Original strand, 36408151 - 36408339
Alignment:
Q  43 aaaaccaagacaatgataagttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaa 142  Q
    ||||| |||||||| || ||| |||  ||| ||||||||||||||| |||||||||||||||||| ||||| ||||||||| ||||  ||||| ||||||    
T  36408151 aaaactaagacaattattagtagttataattttttgaatgtttttacaaatataccctcataaaaatttgttaagtattaattatatccactaatattaa 36408250  T
Q  143 aaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    ||||| |||||||||| |||||||| |||||| ||| |||||||||||||| ||| |||||||||||||||||||||| ||| |||||||    
T  36408251 aaagacaaacattaaacgagggttaaaaaagtttgttaaacaataaatgtacctt-aaagttgtgactttttcttatatataagaccaaa 36408339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 83 - 232
Target Start/End: Complemental strand, 36054958 - 36054809
Alignment:
Q  83 tttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaa 182  Q
    |||||||||||||||||| || |||  ||| ||||||||||||| |  ||||| ||||||||||| ||||||||| | |||| || |||||||| | |||    
T  36054958 tttttataaatatacccttattaaaaattgggaagtattaaatacatccactaatattaaaaagacaaacattaattaaggggtataaaagtcttttaaa 36054859  T
Q  183 caataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    |||||||| || ||||||||||||||| ||||||||||||||||||||||    
T  36054858 caataaatataccttaaaagttgtgacattttcttataaataggaccaaa 36054809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 43 - 172
Target Start/End: Complemental strand, 5924004 - 5923871
Alignment:
Q  43 aaaaccaagacaatgataagttgttgcaatgttttgaatgtttttataaatata----ccctcataaaattttgtgaagtattaaatatacacactatta 138  Q
    |||||||||| ||| || ||| || | ||| |||| |||||||||| |||||||    ||||||||||| ||||| ||||||||| ||||||||||| ||    
T  5924004 aaaaccaagataatcattagtggtagtaattttttaaatgtttttaaaaatatatatgccctcataaaaatttgtaaagtattaattatacacactaata 5923905  T
Q  139 ttaaaaagataaacattaaatgagggttagaaaa 172  Q
    ||||||||| ||||||||||||||||||||||||    
T  5923904 ttaaaaagacaaacattaaatgagggttagaaaa 5923871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 74 - 232
Target Start/End: Complemental strand, 8251387 - 8251229
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| |||||| ||||||||||||||||||  |||||||| |||||||| || ||||| ||||||||||| || |||||||| | ||  | ||| |    
T  8251387 ttttgaatatttttacaaatataccctcataaaaaattgtgaagcattaaataaactcactaatattaaaaagacaaccattaaataatggggaaaaagg 8251288  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    ||| | || |||||| |  | ||||||||||||||  ||||||||||||||||||||||    
T  8251287 tcttttaagcaataattacaccttaaaagttgtgatattttcttataaataggaccaaa 8251229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 231
Target Start/End: Complemental strand, 31659003 - 31658847
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| |||||| ||||||| |||||||||| ||  || || |||||||| |  ||||| ||||||||||| ||||||||||| | ||||| |||||    
T  31659003 ttttgaatatttttacaaatatatcctcataaaaatta-tgcagcattaaatacatccactagtattaaaaagacaaacattaaataaaggttaaaaaag 31658905  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaa 231  Q
    ||| | ||||||||| |  ||||||||||||||||  ||||||||||||||| |||||    
T  31658904 tcttttaaacaataactacatcttaaaagttgtgatattttcttataaatagaaccaa 31658847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 74 - 231
Target Start/End: Complemental strand, 2207921 - 2207766
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| |||||| |||||||||||||||||| || |||||| |||||||| || || || ||||||||| | ||||||||||| |||| |||||||     
T  2207921 ttttgaatatttttacaaatataccctcataaaaatt-gtgaagcattaaatacacccattaatattaaaaatacaaacattaaataaggggtagaaaat 2207823  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaa 231  Q
    ||| | |  |||||| || ||||||||| ||||||  ||||| |||||||||||||||    
T  2207822 tctttaacgcaataactgcatcttaaaaattgtgatattttc-tataaataggaccaa 2207766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 2152472 - 2152369
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattatt-aaaaagataaacattaaatgagggttagaaaa 172  Q
    |||||||| |||||||||||||||||| ||||||  |||||||| |||||||| || | ||| |||| ||||||||||||||||||| |||| |||||||    
T  2152472 ttttgaatatttttataaatatacccttataaaaaattgtgaagcattaaatagactcgctaatattaaaaaagataaacattaaataaggggtagaaaa 2152373  T
Q  173 gtct 176  Q
    ||||    
T  2152372 gtct 2152369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 74 - 231
Target Start/End: Original strand, 16890265 - 16890425
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattatt---aaaaagataaacattaaatgagggttagaa 170  Q
    |||||||| |||||| ||||||||||||||||||  |||||||  |||||||| || ||||| ||||   ||||| | ||||| ||||| | || |||||    
T  16890265 ttttgaatatttttacaaatataccctcataaaaaattgtgaaacattaaataaactcactaatatttataaaaaaacaaacaataaataaagggtagaa 16890364  T
Q  171 aagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaa 231  Q
    |||||| | ||||| ||| | || ||||||||||||||  ||||| |||||||||||||||    
T  16890365 aagtctttgaaacactaactataccttaaaagttgtgatattttcatataaataggaccaa 16890425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 1445504 - 1445349
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    ||||||||  ||||| ||||||||| |||| |||  |||||||  |||||||| || ||||| |||  |||||| ||||||||||| |||| ||||||||    
T  1445504 ttttgaatacttttacaaatataccttcattaaaaattgtgaaacattaaatacactcactaatatctaaaagagaaacattaaat-agggatagaaaag 1445406  T
Q  174 tctgtcaaacaataaatgt-atcttaaaagttgtgactttttcttataaataggacc 229  Q
    ||  | || |||||| |   | ||||||||||||||| |||||||||||||||||||    
T  1445405 tcatttaagcaataacttacaccttaaaagttgtgacattttcttataaataggacc 1445349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 30653628 - 30653701
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaaga 147  Q
    ||||||||  ||||| |||||||||||||||||| ||||||||  |||||||| ||| |||| |||||||||||    
T  30653628 ttttgaataattttacaaatataccctcataaaaatttgtgaaacattaaatacacaaactagtattaaaaaga 30653701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 21504882 - 21504936
Alignment:
Q  178 tcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    |||||||||||||  |||||||||||||| || ||||||||||||| ||||||||    
T  21504882 tcaaacaataaatacatcttaaaagttgtaacattttcttataaattggaccaaa 21504936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 30112485 - 30112578
Alignment:
Q  137 tattaaaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggacca 230  Q
    ||||||||||| | |||||||| ||||| || |||| ||| | || |||||| |  | ||||||| ||||||| ||||||||||||||||||||    
T  30112485 tattaaaaagacatacattaaacgagggataaaaaaatcttttaagcaataactacaccttaaaatttgtgacattttcttataaataggacca 30112578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 4641131 - 4641095
Alignment:
Q  137 tattaaaaagataaacattaaatgagggttagaaaag 173  Q
    ||||||||||| |||||||||||||||||||||||||    
T  4641131 tattaaaaagacaaacattaaatgagggttagaaaag 4641095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 35431614 - 35431579
Alignment:
Q  196 ttaaaagttgtgactttttcttataaataggaccaa 231  Q
    |||||||||||||| |||||||||||||||||||||    
T  35431614 ttaaaagttgtgacattttcttataaataggaccaa 35431579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 43 - 224
Target Start/End: Original strand, 25376810 - 25376991
Alignment:
Q  43 aaaaccaagacaatgataagttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaa 142  Q
    |||||||||||||| || |||||||| ||| ||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||| ||| | |||| |    
T  25376810 aaaaccaagacaatcattagttgttgtaattttttgaatgtttttacaaatataccctcttaaaaatttgtgaagtattaaatatactcacaaatattga 25376909  T
Q  143 aaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaata 224  Q
    |||||| ||||||||||||||||||||||||||| | ||||||||| | || |||||||  |||||||||||||| ||||||    
T  25376910 aaagatcaacattaaatgagggttagaaaagtcttttaaacaataattataccttaaaatctgtgactttttcttgtaaata 25376991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 83 - 232
Target Start/End: Complemental strand, 18838893 - 18838745
Alignment:
Q  83 tttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaa 182  Q
    |||||| ||||||||||||||||||  |||||||  |||||||| || ||||| |||||||||||||| ||||||||||||| ||||||||||| | |||    
T  18838893 tttttacaaatataccctcataaaaaattgtgaaacattaaatacacccactaatattaaaaagataatcattaaatgaggg-tagaaaagtcttttaaa 18838795  T
Q  183 caataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    |||||| | || |||||||||| |||| |||||| |||||||| ||||||    
T  18838794 caataattataccttaaaagttatgacattttctcataaatagaaccaaa 18838745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 131 - 231
Target Start/End: Complemental strand, 54864018 - 54863918
Alignment:
Q  131 cactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggacca 230  Q
    ||||| |||| ||||||| ||||||||||||| |||||||||| || | |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  54864018 cactaatattgaaaagatcaacattaaatgagagttagaaaagccttttaaacaataaatgtaccttaaaagttgtgactttttcttataaataggacca 54863919  T
Q  231 a 231  Q
    |    
T  54863918 a 54863918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 21128195 - 21128097
Alignment:
Q  126 atacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaata 224  Q
    |||| ||||| ||| |||||||||||||| ||||||||||| ||||||||| | ||| ||||||| ||  ||||||||| |||| ||||||||||||||    
T  21128195 atactcactaatataaaaaagataaacataaaatgagggttggaaaagtcttttaaaaaataaatatacattaaaagttatgacattttcttataaata 21128097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 25382531 - 25382400
Alignment:
Q  43 aaaaccaagacaatgataagttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaa 142  Q
    |||| ||||||||| || | || | ||||| ||||||||||||| | ||||||||||| || ||| |||||||||||||||| |||| ||||| || |||    
T  25382531 aaaatcaagacaataattaattatggcaattttttgaatgtttt-acaaatatacccttatgaaaatttgtgaagtattaaaaatactcactaatactaa 25382433  T
Q  143 aaagataaacattaaatgagggttagaaaagtc 175  Q
    |||||  |||||||||| |||| || |||||||    
T  25382432 aaagactaacattaaataagggctacaaaagtc 25382400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 31707349 - 31707448
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| |||||| |||||||||||||||||| ||| ||||| ||   ||| || ||||| ||||||||||| ||||||||||| |||| ||||||||    
T  31707349 ttttgaatatttttacaaatataccctcataaaaatttatgaagcat---atacacccactaatattaaaaagacaaacattaaataaggggtagaaaag 31707445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 83 - 226
Target Start/End: Complemental strand, 16572391 - 16572251
Alignment:
Q  83 tttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaa 182  Q
    |||||| ||||||||| | ||| ||| ||||||| ||||||||| |   |||| ||||||||| | |  ||||||||||||| || |||| ||||| ||     
T  16572391 tttttaaaaatataccattatagaatattgtgaaatattaaataca---actaatattaaaaatacagtcattaaatgagggataaaaaattctgttaag 16572295  T
Q  183 caataaatgtatcttaaaagttgtgactttttcttataaatagg 226  Q
    |||||| |  | ||||||||||||||| ||||||||||||||||    
T  16572294 caataactacaccttaaaagttgtgacattttcttataaatagg 16572251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 33721675 - 33721768
Alignment:
Q  137 tattaaaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggacca 230  Q
    |||||||| ||||||||||||| ||| | ||||||||||| | ||||||||| |  |  |||||| ||||||| ||||||||||||||||||||    
T  33721675 tattaaaaggataaacattaaacgagaggtagaaaagtcttttaaacaataactacacattaaaaattgtgacattttcttataaataggacca 33721768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 231
Target Start/End: Complemental strand, 34319682 - 34319546
Alignment:
Q  94 ataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgta 193  Q
    ||||||||||||||  |||| ||  ||||||||||  ||  | ||||||||||| ||||||||||| ||||| |||||||  | | |||||||||  | |    
T  34319682 ataccctcataaaaaattgtaaaacattaaatatatccataaatattaaaaagaaaaacattaaataagggt-agaaaagctttttaaacaataaccgca 34319584  T
Q  194 tcttaaaagttgtgactttttcttataaataggaccaa 231  Q
      |||||| ||||||| |||||||||||||||||||||    
T  34319583 ctttaaaaattgtgacattttcttataaataggaccaa 34319546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 44884411 - 44884507
Alignment:
Q  137 tattaaaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatctt--aaaagttgtgactttttcttataaataggaccaaa 232  Q
    ||||||||||  |||||||||||||||| || |||||||| | ||||||||| |  | |||  |||||||||||| |||||||||| |||||||||||    
T  44884411 tattaaaaaggcaaacattaaatgagggata-aaaagtcttttaaacaataactacaccttaaaaaagttgtgacattttcttatatataggaccaaa 44884507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 232
Target Start/End: Original strand, 42312399 - 42312564
Alignment:
Q  75 tttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattatt-------aaaaagataaacattaaatgagggtta 167  Q
    ||||||| |||||| ||||||||||||||||||  |||||||| || |||||||  | ||| ||||       ||||||| |||||| |||  | || ||    
T  42312399 tttgaatatttttacaaatataccctcataaaaaattgtgaagcataaaatatatcctctaatattaaaaaaaaaaaagacaaacataaaacaaaggata 42312498  T
Q  168 gaaaagtctgtcaaacaataaatgtatcttaaaagttgtgact-ttttcttataaataggaccaaa 232  Q
    ||||||||| | || |||||| | || |||||||||||||| | |||| ||||||||| |||||||    
T  42312499 gaaaagtcttttaagcaataactataccttaaaagttgtgattatttttttataaataagaccaaa 42312564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 47231644 - 47231718
Alignment:
Q  150 aacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaata 224  Q
    |||||||||| || | || |||| ||| | ||||||||||| ||||||||||||  |||| ||||||||||||||    
T  47231644 aacattaaataagaggtaaaaaaatcttttaaacaataaatatatcttaaaagtattgacattttcttataaata 47231718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 43 - 232
Target Start/End: Original strand, 30041272 - 30041460
Alignment:
Q  43 aaaaccaagacaatgataagttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaa 142  Q
    |||||||||||||| || ||| |||| ||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||  ||||| ||||||    
T  30041272 aaaaccaagacaatcattagtggttgtaattttttgaatgtttttataaatataccctcataaagatttgtgaagtattaaatataaccactaatattaa 30041371  T
Q  143 aaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    ||||| ||||||||| | |||||||||||||||| | ||||||||||| || ||| |||||||| ||||||||| ||| || ||||||||    
T  30041372 aaagacaaacattaattaagggttagaaaagtcttttaaacaataaatatacctt-aaagttgtcactttttctaatatattggaccaaa 30041460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 35104850 - 35104722
Alignment:
Q  44 aaaccaagacaatgataagttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaa 143  Q
    ||||||||||||| || |||||||||||| |||||||||||| || |||||||||||| ||||||||| ||| ||||||||||||||||||| |||| ||    
T  35104850 aaaccaagacaattattagttgttgcaattttttgaatgtttgtacaaatataccctcttaaaattttttgaggtattaaatatacacactaatattgaa 35104751  T
Q  144 aagataaacattaaatgagggttagaaaa 172  Q
    ||||  |||||||||||| ||||||||||    
T  35104750 aagaccaacattaaatgaaggttagaaaa 35104722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 137 - 220
Target Start/End: Complemental strand, 49983644 - 49983561
Alignment:
Q  137 tattaaaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttata 220  Q
    ||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  49983644 tattaaaaagacaaacattaaatgagggttagaaaagtcttttaaacaataaatgtatcttaaaagttgtgactttttcttata 49983561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 74 - 232
Target Start/End: Complemental strand, 41560132 - 41559980
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||| |      | ||||| ||||| ||||| |||||||||||||| |||| |||||    
T  41560132 ttttgaatgtttttataaatataccttcataaaaatttgtgaagtataa------ctcactaatattagaaagacaaacattaaatgagagttaaaaaag 41560039  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    ||| | |||  ||||||||||||||||| || ||| ||||||||||| || ||||||||    
T  41560038 tcttttaaatcataaatgtatcttaaaaattatgattttttcttatatattggaccaaa 41559980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 74 - 164
Target Start/End: Original strand, 43105144 - 43105234
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgaggg 164  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||| |||||||| ||||| |||| ||||||| |||||||||||||||    
T  43105144 ttttgaatgtttttacaaatataccctcataaaaatttgtgaagtatcaaatatacccactaatattgaaaagatcaacattaaatgaggg 43105234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 74 - 232
Target Start/End: Complemental strand, 45261512 - 45261357
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||  |||||| ||||||||||||| ||||||  |||||  |||||||| || ||||| |||| |||||| ||||||||||| |||| ||||||||    
T  45261512 ttttgaacatttttacaaatataccctcaaaaaatt--gtgaaacattaaatacacccactaatatttaaaagagaaacattaaat-agggatagaaaag 45261416  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    ||  | || |||||| |  | ||||||||||||||| ||||||||||||||||||||||    
T  45261415 tcatttaagcaataactacagcttaaaagttgtgacattttcttataaataggaccaaa 45261357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 74 - 232
Target Start/End: Original strand, 40344929 - 40345085
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| |||||| ||||||||||| ||||||  |||||||  ||||||||  | ||||| ||||||||||| ||| |||||||||||| || |||||    
T  40344929 ttttgaatatttttacaaatatacccttataaaaaattgtgaaccattaaata--ctcactaatattaaaaagacaaatattaaatgaggggtataaaag 40345026  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    ||| | || |||| | |  | ||||||||||||||| |||||||||| |||||| ||||    
T  40345027 tctcttaagcaatgactacaccttaaaagttgtgacattttcttatagataggaacaaa 40345085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 83 - 224
Target Start/End: Complemental strand, 22923773 - 22923629
Alignment:
Q  83 tttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaa 182  Q
    |||||| ||||||||| |||||||| ||||||| |||||||||||||  |||| |||||||||||| |  ||||||| | | ||||||| |||  | ||     
T  22923773 tttttacaaatataccttcataaaaatttgtgatgtattaaatatacctactaatattaaaaagatcacaattaaattatgattagaaatgtcctttaac 22923674  T
Q  183 caataaat---gtatcttaaaagttgtgactttttcttataaata 224  Q
    ||||||||   |||||||| ||||||| |||||||||||||||||    
T  22923673 caataaatatagtatcttacaagttgtaactttttcttataaata 22923629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 49983892 - 49983786
Alignment:
Q  43 aaaaccaagacaatgataagttgttgcaatgttttgaatgtttttat---aaatataccctcataaaattttgtgaagtattaaatatacacactattat 139  Q
    |||||||||||||| || |||  ||| ||| |||||||||||||| |   |||||||||||||||||| ||||||||||||||||||||| ||||| |||    
T  49983892 aaaaccaagacaatcattagtgattgtaat-ttttgaatgttttttttacaaatataccctcataaaaatttgtgaagtattaaatatacccactaatat 49983794  T
Q  140 taaaaaga 147  Q
    ||||||||    
T  49983793 taaaaaga 49983786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 30577952 - 30577821
Alignment:
Q  61 agttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatg 160  Q
    |||||||| ||| |||| |||||||||| ||||||||| |||||||| |  |||||||||||||||||   |||| | || ||||||  |||||||||||    
T  30577952 agttgttgtaattttttaaatgtttttacaaatataccatcataaaaatgagtgaagtattaaatatatctactaatgttgaaaagaccaacattaaatg 30577853  T
Q  161 agggttagaaaagtctgtcaaacaataaatgt 192  Q
    |||| |||||| |||| | ||| |||||||||    
T  30577852 agggatagaaacgtcttttaaataataaatgt 30577821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 43105935 - 43106004
Alignment:
Q  154 ttaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaata 224  Q
    ||||||||||||||||||||||| | |||||||||||  | ||||||||||||||||||||||||||||||    
T  43105935 ttaaatgagggttagaaaagtcttttaaacaataaata-accttaaaagttgtgactttttcttataaata 43106004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 17003574 - 17003729
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| |||||| ||||||||||||||||||  |||||||  |||||| | || ||||| |||| |||||| ||||||||||| |||| || |||||    
T  17003574 ttttgaatatttttacaaatataccctcataaaa-attgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat-agggataaaaaag 17003671  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgac-tttttcttataaataggacca 230  Q
    ||  | || |||||| |  | ||||||||||||||| ||||| |||||||||||||||    
T  17003672 tcatttaagcaataactacaccttaaaagttgtgacattttttttataaataggacca 17003729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 122 - 231
Target Start/End: Original strand, 32211834 - 32211943
Alignment:
Q  122 aaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataa 221  Q
    ||||| || ||||| ||||||||||| ||||||||||| | || ||||||||||| | ||||||||| |  | ||||||||||||||  |||||||||||    
T  32211834 aaatacacccactaatattaaaaagacaaacattaaataacgggtagaaaagtcttttaaacaataactacaccttaaaagttgtgaaattttcttataa 32211933  T
Q  222 ataggaccaa 231  Q
    ||| ||||||    
T  32211934 ataagaccaa 32211943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 228
Target Start/End: Complemental strand, 24650285 - 24650120
Alignment:
Q  61 agttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatg 160  Q
    |||||||||||| ||||  ||  ||||| ||||||||  | ||||||  ||||||| |||||||||| | ||||| ||||||||||| ||| |||||| |    
T  24650285 agttgttgcaattttttttatacttttacaaatatacttttataaaaaattgtgaaatattaaatatgctcactaatattaaaaagacaaaaattaaaag 24650186  T
Q  161 agggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggac 228  Q
    | ||||| |||||| | |  |||||||||| || |||||||||||| |  |||| |||||||||||||    
T  24650185 aaggttaaaaaagtttttttaacaataaatataccttaaaagttgtaa--tttttttataaataggac 24650120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 231
Target Start/End: Original strand, 8825356 - 8825511
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaa--cattaaatgagggttagaaa 171  Q
    |||| ||| |||||||||||||||||| ||||||  ||||| || |||||||| || || || ||||||||   ||||  |||||||||| || ||||||    
T  8825356 ttttaaatatttttataaatatacccttataaaaaattgtgtagcattaaatacactcattaatattaaaa---taaagtcattaaatgaaggatagaaa 8825452  T
Q  172 agtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaa 231  Q
    ||||| | || |||||| |  | ||||||| ||||||| |||||||||||||||||||||    
T  8825453 agtcttttaagcaataactacaccttaaaa-ttgtgacattttcttataaataggaccaa 8825511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 232
Target Start/End: Complemental strand, 38854744 - 38854607
Alignment:
Q  95 taccctcataaaattttgtgaagtattaaatatacacactattattaaaaagat-aaacattaaatgagggttagaaaagtctgtcaaacaataaatgta 193  Q
    |||| |||||||| ||||||||||||| ||| ||| || |  ||||||||| |  ||| |||||| |||||| |||||||||| || || ||||||| ||    
T  38854744 taccttcataaaaatttgtgaagtattgaatttactcattgatattaaaaaaaacaaaaattaaacgagggtgagaaaagtct-tctaaaaataaatata 38854646  T
Q  194 tcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
      ||||||||||||| |||||||||||||||| ||||||    
T  38854645 ctttaaaagttgtgaatttttcttataaatagaaccaaa 38854607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 25295085 - 25295198
Alignment:
Q  110 ttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgac 209  Q
    |||||||  ||| |||| || ||||| ||||||||||| || ||||||||||||| || |||||||| | ||||||||| |  | |||||||||||| ||    
T  25295085 ttgtgaaacatttaataaacccactaatattaaaaagagaagcattaaatgagggataaaaaagtcttttaaacaataattacaccttaaaagttgtaac 25295184  T
Q  210 tttttcttataaat 223  Q
     |||||||||||||    
T  25295185 attttcttataaat 25295198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 83 - 232
Target Start/End: Original strand, 46918469 - 46918617
Alignment:
Q  83 tttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaa 182  Q
    |||||| ||||||||||| ||| ||| || ||||  |||||||| |  || || ||||||||||| | ||||||||||| || || |||||||| | ||     
T  46918469 tttttacaaatatacccttatagaatattttgaaacattaaatacattcattaatattaaaaagacagacattaaatgaaggataaaaaagtcttttaag 46918568  T
Q  183 caataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    |||||| | |  ||||||| ||||||| ||||||||||||||||||||||    
T  46918569 caataactatc-cttaaaaattgtgacattttcttataaataggaccaaa 46918617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 231
Target Start/End: Complemental strand, 35455455 - 35455302
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| ||| || ||||||||  ||||||||  |||||||  |||||||| || ||||| |||| |||  ||||||||||||| |||| ||||||||    
T  35455455 ttttgaatatttctacaaatatac--tcataaaaaattgtgaaacattaaatacactcactaatatttaaat-ataaacattaaat-agggatagaaaag 35455360  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaa 231  Q
    ||  | || |||||| |  | ||||||||||||||| |||||||||||||| ||||||    
T  35455359 tcatttaagcaataattacaccttaaaagttgtgacattttcttataaataagaccaa 35455302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 199
Target Start/End: Complemental strand, 49787879 - 49787770
Alignment:
Q  90 aaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaa 189  Q
    ||||| ||||||||  || ||||| || |||||||||||| || || | |||||| || |||||||||| |||||||| |||||| | | ||||||||||    
T  49787879 aaatacaccctcattgaaatttgtaaaatattaaatatactcattaattttaaaaggacaaacattaaacgagggttataaaagtattttaaacaataaa 49787780  T
Q  190 tgtatcttaa 199  Q
    | ||||||||    
T  49787779 tatatcttaa 49787770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 43320194 - 43320286
Alignment:
Q  140 taaaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    |||||||| ||||||| |||  ||| ||||||||||| | |||||||||    | ||||||||||||||| |||||||||||||||| |||||    
T  43320194 taaaaagacaaacattgaataggggctagaaaagtcttttaaacaataaccacaccttaaaagttgtgacattttcttataaataggtccaaa 43320286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 42279233 - 42279287
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatata 128  Q
    |||| ||| |||||| |||||||||||||||||| ||| |||| |||||||||||    
T  42279233 tttttaatatttttacaaatataccctcataaaaatttatgaaatattaaatata 42279287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 9425675 - 9425503
Alignment:
Q  43 aaaaccaagacaatgataagttgttgcaatgtttt-gaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattatta 141  Q
    |||||||||| ||| || |||||||||||| |||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||  ||||||||| |    
T  9425675 aaaaccaagaaaatcattagttgttgcaatttttttgaatgtttttacaaatatactctcataaaattctgtgaagtattaaatatattcactattatga 9425576  T
Q  142 aaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgacttttt 214  Q
    |||||||||||||||||||||| ||| |||||||| | ||||||||||| || || ||||||||||| |||||    
T  9425575 aaaagataaacattaaatgaggattaaaaaagtcttttaaacaataaatatacctcaaaagttgtgatttttt 9425503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 74 - 217
Target Start/End: Complemental strand, 6658029 - 6657887
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||| ||||| |||| |||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||    
T  6658029 tttttaatgtatttacaaatataccctcataaaaatttgtgaagtattaaatatacccactaatattaaaaagacaaacattaaatgagggttagaaaag 6657930  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttctt 217  Q
    ||  | |||||||||||||| ||| |||||||||||||||||||    
T  6657929 tcatttaaacaataaatgtacctt-aaagttgtgactttttctt 6657887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 43 - 232
Target Start/End: Complemental strand, 19780413 - 19780224
Alignment:
Q  43 aaaaccaagacaatgataagttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaa 142  Q
    |||||||||| ||| || |||| ||| ||| |||| |||||||||| |||||||||    || || ||||||||||||||||||||| ||||| | || |    
T  19780413 aaaaccaagataatcattagttattgtaatttttttaatgtttttacaaatataccgcattataaatttgtgaagtattaaatatacccactaattttga 19780314  T
Q  143 aaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    ||||| |||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||  ||||||||||||| |||||||||||    
T  19780313 aaagagaaacattaaatgagggttagaaaagtcttttaaacaataaatatatcttaaaagttgaaactttttcttatatataggaccaaa 19780224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 231
Target Start/End: Complemental strand, 180491 - 180334
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| | |||| ||||||||||| ||||||  || |||||  ||||||| |   |||| ||||||||||| ||||||||||| |||| || |||||    
T  180491 ttttgaatatgtttacaaatatacccttataaaaaattttgaagcgttaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaag 180392  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaa 231  Q
    ||| | || |||||| |  ||||||||| ||||||  |||||||||||||||||||||    
T  180391 tcttttaagcaataactacatcttaaaaattgtgatattttcttataaataggaccaa 180334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 187
Target Start/End: Original strand, 34837147 - 34837260
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| |||||| ||||||||||||||||||  |||||||| ||| |||| |  || || ||||||||||| || |||||||| |||| || |||||    
T  34837147 ttttgaatatttttacaaatataccctcataaaaaattgtgaagcattcaatacatccattaatattaaaaagacaagcattaaataaggggtaaaaaag 34837246  T
Q  174 tctgtcaaacaata 187  Q
    ||| | ||||||||    
T  34837247 tcttttaaacaata 34837260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 232
Target Start/End: Original strand, 606623 - 606772
Alignment:
Q  83 tttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaa 182  Q
    |||||| ||||||||||| ||| ||| |||||||  |||||||| |  ||||| ||||||||| | |  |||||||| |||| |  |||||| | | ||     
T  606623 tttttacaaatatacccttatagaatgttgtgaaacattaaatacatccactaatattaaaaatacagtcattaaataagggattaaaaagtattttaag 606722  T
Q  183 caataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    | |||| |  | ||||||||||||||| ||||||||||||||||||||||    
T  606723 ctataagtacaccttaaaagttgtgacattttcttataaataggaccaaa 606772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 1856839 - 1856752
Alignment:
Q  137 tattaaaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaata 224  Q
    ||||||||||| ||| |||||||||| | ||||||||||| | ||||||||| ||   ||||||||||||||  |||| |||||||||    
T  1856839 tattaaaaagagaaatattaaatgagagatagaaaagtcttttaaacaataactgatacttaaaagttgtgatatttttttataaata 1856752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 12143716 - 12143771
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatac 129  Q
    |||||||| |||||| ||||| ||||||||||||  |||||||| |||||||||||    
T  12143716 ttttgaatatttttacaaatacaccctcataaaaaattgtgaagcattaaatatac 12143771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 46 - 232
Target Start/End: Original strand, 38802 - 38987
Alignment:
Q  46 accaagacaatgataagttgttgcaatgttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaa 145  Q
    ||||| ||||| || |||| ||||||| ||||||||||||||| |||||||| ||||||||| |||| ||| ||||||| |||  ||||| |||| | ||    
T  38802 accaaaacaatcattagttcttgcaattttttgaatgtttttacaaatatactctcataaaaatttgggaactattaaacatatccactaatattgataa 38901  T
Q  146 gataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
     |  | |||| ||| |||| ||||||| | | | ||||||||||| |||||||||| |||||||||||||||||||||| |||||||    
T  38902 aacga-cattcaataagggctagaaaaatattttaaacaataaatatatcttaaaaattgtgactttttcttataaataagaccaaa 38987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 217
Target Start/End: Complemental strand, 131881 - 131735
Alignment:
Q  74 ttttgaatgttttt-ataaatataccctcataaaattttgtgaagt---attaaatatacacactattattaaaaagataaacattaaatgagggttaga 169  Q
    |||||||||||||| | |||||||||||||||||| ||||||||||   ||||||||||  ||||| ||||||||||| |||| || | ||| |||||||    
T  131881 ttttgaatgttttttacaaatataccctcataaaaatttgtgaagtattattaaatataaccactaatattaaaaagacaaacttttattgaaggttaga 131782  T
Q  170 aaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttctt 217  Q
    ||||||| |  ||||||||||| | ||| |||||||||||||||||||    
T  131781 aaagtcttttgaacaataaatgcacctt-aaagttgtgactttttctt 131735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 83 - 232
Target Start/End: Complemental strand, 3164 - 3015
Alignment:
Q  83 tttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaa 182  Q
    |||||| ||| || |||| ||| ||| |||||||  |||||||| |  ||||| ||||||||||| ||  ||| |||||||| ||||||||||| | |||    
T  3164 tttttacaaacatgcccttatagaatgttgtgaaacattaaatacatccactaatattaaaaagagaattattgaatgagggatagaaaagtcttttaaa 3065  T
Q  183 caataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    |||||| |  | ||||||||||||||| ||||||||||||||||||||||    
T  3064 caataactacaccttaaaagttgtgacattttcttataaataggaccaaa 3015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 503 - 651
Alignment:
Q  83 tttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaa 182  Q
    |||||| ||||||||||| ||| ||| |||||||  |||||||  |  ||||| |||||||| || || ||||||||||||| || |||||||| | |||    
T  503 tttttacaaatatacccttatagaatgttgtgaaacattaaatggatccactaatattaaaacgacaatcattaaatgagggataaaaaagtcttttaaa 602  T
Q  183 caataaatgtatcttaaaagttgtgactttttcttataaataggaccaa 231  Q
    |||||| |  | |||||| |||||||||||||||||||| |||||||||    
T  603 caataactacaccttaaatgttgtgactttttcttataattaggaccaa 651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 74 - 232
Target Start/End: Complemental strand, 51424 - 51266
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| |||||| || |||||||||||||||  |||||||  |||||||| ||  ||||  |||||||||| ||  |||||||||||| || ||||     
T  51424 ttttgaatatttttacaattataccctcataaaaagttgtgaaacattaaatacaccaactaaaattaaaaagagaattattaaatgagggataaaaaaa 51325  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    ||| | || ||||||||  | ||||||||||||||| ||| ||||||||||| ||||||    
T  51324 tcttttaagcaataaatacaccttaaaagttgtgacatttacttataaatagaaccaaa 51266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 11691056 - 11691152
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaa 170  Q
    |||||||| |||||| ||||| | ||||||||||| || |||| ||||||||| || |||||  |||||||||| |||||||||||||||| |||||    
T  11691056 ttttgaatatttttacaaatacatcctcataaaatattatgaaatattaaatacactcactaagattaaaaagagaaacattaaatgagggatagaa 11691152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 227
Target Start/End: Complemental strand, 27193153 - 27193009
Alignment:
Q  83 tttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaa 182  Q
    |||||| ||||||| | ||||||||  || ||||  |||||| |||| || |  ||||||||||| |  |||||||||| || || |||||||| | |||    
T  27193153 tttttacaaatatatcatcataaaaaattatgaaacattaaaaatactcagttatattaaaaagagatgcattaaatgaaggataaaaaagtcttttaaa 27193054  T
Q  183 caataaatgtatcttaaaagttgtgactttttcttataaatagga 227  Q
    |||||| | |||||||||||||||||| ||| |||||||||||||    
T  27193053 caataactatatcttaaaagttgtgacatttccttataaatagga 27193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 225
Target Start/End: Complemental strand, 17693705 - 17693562
Alignment:
Q  79 aatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttaga-aaagtctg 177  Q
    |||||||||| |||||||||||| ||||||||| ||||||    ||||||  ||||| |||||||| |||||||||| |||||||  || | |||||||     
T  17693705 aatgtttttacaaatataccctcgtaaaattttatgaagt----aatatatccactagtattaaaatgataaacattgaatgaggactaaagaaagtctt 17693610  T
Q  178 tcaaacaataaatgtatcttaaaagttgtgactttttcttataaatag 225  Q
    | |   |||||||  ||||||||| ||||||| |||||||||||||||    
T  17693609 ttatgtaataaatacatcttaaaaattgtgacattttcttataaatag 17693562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 1962962 - 1963010
Alignment:
Q  180 aaacaataaatgtatcttaaaagttgtgactttttcttataaataggac 228  Q
    ||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  1962962 aaacaataaatatattttaaaagttgtcactttttcttataaataggac 1963010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 3257251 - 3257354
Alignment:
Q  119 attaaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttgtgactttttctta 218  Q
    ||||||||||  ||||| ||||||||||| ||||||||||| || | ||||||||||| | ||||||||  |    ||||||||||||||  ||||||||    
T  3257251 attaaatatatccactaatattaaaaagacaaacattaaataagagatagaaaagtcttttaaacaatagttacgccttaaaagttgtgatattttctta 3257350  T
Q  219 taaa 222  Q
    ||||    
T  3257351 taaa 3257354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 230
Target Start/End: Complemental strand, 6688924 - 6688782
Alignment:
Q  90 aaatataccctcataaaattttgtgaagtattaaatatacacactattat--taaaaagataaacattaaatgagggttagaaaagtctgtcaaacaata 187  Q
    ||||||||||||||||||  |||| ||| |||||||| ||  |||| |||  |||||| | | | ||||||| |||| ||||||||||| | ||||||||    
T  6688924 aaatataccctcataaaaaattgtaaagcattaaatacacttactaatatattaaaaacaaacatattaaataagggatagaaaagtcttttaaacaata 6688825  T
Q  188 aatgtatcttaaaagttgtgactttttcttataaataggacca 230  Q
    | |  | ||||||||||||||  ||||||||||  ||||||||    
T  6688824 actacaccttaaaagttgtgatattttcttatatttaggacca 6688782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 232
Target Start/End: Complemental strand, 18705150 - 18704992
Alignment:
Q  74 ttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaag 173  Q
    |||||||| |||||| ||||||| ||| ||||||  |||||||| |||||||| ||  | || ||||||||| | ||||||||||| | || || |||||    
T  18705150 ttttgaatatttttacaaatatatccttataaaaagttgtgaagcattaaatacacctattaatattaaaaacaaaaacattaaataaagggtaaaaaag 18705051  T
Q  174 tctgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    ||| | ||  ||||| |  | |||||||||| |||  ||||||||||| | ||||||||    
T  18705050 tcttttaagtaataactacaccttaaaagttatgatgttttcttataatttggaccaaa 18704992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 228
Target Start/End: Original strand, 3629215 - 3629360
Alignment:
Q  83 tttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaa 182  Q
    |||||| ||||||| ||| ||| ||| |||||||  |||||||| |  ||||| ||||||||| | |  |||||||| |||| || |||||||| | ||     
T  3629215 tttttacaaatataaccttatagaatgttgtgaaacattaaatacattcactaatattaaaaatacagtcattaaattagggatacaaaagtcttttaag 3629314  T
Q  183 caataaatgtatcttaaaagttgtgactttttcttataaataggac 228  Q
     ||||| |  | ||||||||||||||| ||||||||||||| ||||    
T  3629315 taataactacaccttaaaagttgtgacattttcttataaattggac 3629360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 17686384 - 17686233
Alignment:
Q  73 gttttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaa 172  Q
    ||||| |||||||||| || |||||| ||||||||   | ||||||||||||| |   ||||| |||||||||||| ||||||||| |||| ||  ||||    
T  17686384 gttttaaatgtttttacaagtataccttcataaaaacatatgaagtattaaatgtttccactagtattaaaaagat-aacattaaaggaggattgaaaaa 17686286  T
Q  173 gtctgtcaaacaataaatgtatcttaaaagttgtgac-tttttcttataaata 224  Q
    |||| | | | | |||||  | |||||||||| |||| |||||||||||||||    
T  17686285 gtcttttatatagtaaatacaccttaaaagttatgacttttttcttataaata 17686233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 186
Target Start/End: Complemental strand, 2225722 - 2225619
Alignment:
Q  83 tttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaa 182  Q
    |||||| ||||||||| ||||||||  |||||||  |||||||| |  ||||| ||||||||| | ||||||||||| |  | ||||||||||| | |||    
T  2225722 tttttacaaatataccttcataaaaagttgtgaaacattaaatacaaccactaatattaaaaacaaaaacattaaataaatggtagaaaagtcttttaaa 2225623  T
Q  183 caat 186  Q
    ||||    
T  2225622 caat 2225619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 205
Target Start/End: Original strand, 11983614 - 11983709
Alignment:
Q  110 ttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtctgtcaaacaataaatgtatcttaaaagttg 205  Q
    |||||||  |||||||| |  ||||| ||||||||||| |||||||||||||||| || |||| ||| | ||||||||| |  | |||||||||||    
T  11983614 ttgtgaaacattaaatacatccactaatattaaaaagagaaacattaaatgaggggtaaaaaaatcttttaaacaataattacaccttaaaagttg 11983709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 23010720 - 23010685
Alignment:
Q  197 taaaagttgtgactttttcttataaataggaccaaa 232  Q
    ||||| ||||||||||||||||||||||||||||||    
T  23010720 taaaatttgtgactttttcttataaataggaccaaa 23010685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 14917865 - 14917792
Alignment:
Q  83 tttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaat 159  Q
    |||||| |||||||||||| |||||  |||||||| |||||||| ||||   |||||||||| | ||||||||||||    
T  14917865 tttttacaaatataccctcgtaaaaaattgtgaagaattaaatacacac---attattaaaaggctaaacattaaat 14917792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 232
Target Start/End: Complemental strand, 154489 - 154333
Alignment:
Q  76 ttgaatgtttttataaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgagggttagaaaagtc 175  Q
    |||||| |||||| ||| || |||||||||||   ||||||| |||||||| || ||| | ||||||||||| ||||||||||| |  | || ||| |||    
T  154489 ttgaatatttttacaaacatgccctcataaaaaactgtgaagcattaaatacacccaccaatattaaaaagacaaacattaaataaaaggtaaaaaggtc 154390  T
Q  176 tgtcaaacaataaatgtatcttaaaagttgtgactttttcttataaataggaccaaa 232  Q
    | | ||||||||| |  | |||||||||||| |  ||||||||||||||| ||||||    
T  154389 ttttaaacaataactacaccttaaaagttgtaatattttcttataaatagaaccaaa 154333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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