View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7993_high_4 (Length: 261)
Name: NF7993_high_4
Description: NF7993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7993_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 100 - 201
Target Start/End: Original strand, 10600410 - 10600511
Alignment:
| Q |
100 |
gtataaataaatagccaaatattggtaaaagatccttaaaataggttttagcgccatcataataacactaggcatttaacactcttcatattctatgcta |
199 |
Q |
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| T |
10600410 |
gtataaataaatagtcaaatattggtaaaagatccttaaaataggttttggcgccatcataataacactaggcatttaacactcttcatcttctatgcta |
10600509 |
T |
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| Q |
200 |
cg |
201 |
Q |
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|| |
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| T |
10600510 |
cg |
10600511 |
T |
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Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 10599945 - 10600025
Alignment:
| Q |
1 |
agtattatcacattagaaattaaaaattatagtaacaatttttatttgagcacatgttaatgattctacaacaaaaaataaat |
83 |
Q |
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| T |
10599945 |
agtattatcacattagaaattaaaattgacattaacaatttttatttgagcac--gttaatgattctagaacaaaaaataaat |
10600025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 2567821 - 2567789
Alignment:
| Q |
73 |
aaaaaataaattaacacaatttacgatgtataa |
105 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
2567821 |
aaaaaataaattaacacaatttacgatgcataa |
2567789 |
T |
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