View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7993_high_5 (Length: 225)
Name: NF7993_high_5
Description: NF7993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7993_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 100 - 209
Target Start/End: Original strand, 6453105 - 6453215
Alignment:
| Q |
100 |
gttgcaaatagcta-ttaagacttaagagagctccccgctacatagattcatttgtgagcaccaactgtaatctttgcagcatcagcaacctcttgtgca |
198 |
Q |
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| T |
6453105 |
gttgcaaatagctacttaagacttaagagagctccccgctacatagattcatttgtgagcaccaactgtaatctttgcagcatcagcaacctcttgtgca |
6453204 |
T |
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| Q |
199 |
tcggccttcat |
209 |
Q |
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|| |||||||| |
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| T |
6453205 |
tctgccttcat |
6453215 |
T |
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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 6463846 - 6463923
Alignment:
| Q |
119 |
acttaagagagctccccgctacatagattcatttgtgagcaccaactgtaatctttgcagcatcagcaacctcttgtg |
196 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||| |
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| T |
6463846 |
acttaagagagctccccaccacatagattcatttgtgagcaccatctgtactctttacagcatcagcagcctcttgtg |
6463923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 44942228 - 44942308
Alignment:
| Q |
117 |
agacttaagagagctccccgctacatagattcatttgtgagcaccaactgtaatctttgcagcatcagcaacctcttgtgc |
197 |
Q |
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|||||||||||||||| || ||| |||||||||||| |||||||||||| || |||| ||||||||||| |||||||||| |
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| T |
44942228 |
agacttaagagagctctccactatatagattcatttttgagcaccaactctattcttaacagcatcagcagcctcttgtgc |
44942308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 52951216 - 52951139
Alignment:
| Q |
120 |
cttaagagagctccccgctacatagattcatttgtgagcaccaactgtaatctttgcagcatcagcaacctcttgtgc |
197 |
Q |
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||||||||| ||| ||||| ||||||||||||||||||||||| ||||| | ||| | || |||||||||||| |||| |
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| T |
52951216 |
cttaagagaactctccgcttcatagattcatttgtgagcaccatctgtactttttactgcgtcagcaacctctcgtgc |
52951139 |
T |
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