View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7993_low_1 (Length: 580)
Name: NF7993_low_1
Description: NF7993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7993_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 6e-57; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 128 - 271
Target Start/End: Complemental strand, 4096183 - 4096042
Alignment:
| Q |
128 |
ttgaaaagataaatgtttgagcaacatatggaaataggaaatacaaaccttttactttgttgaccaaccatttggttccgccttcaatactgttggacag |
227 |
Q |
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| T |
4096183 |
ttgaaaagatagatgtttgagcaacatatggaaataggaaatagaaaccttttactttgttgaccaaccatttggttccgccttcaatactgttggacag |
4096084 |
T |
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| Q |
228 |
tgactgcatatcaaaagaaaagaagaaggtgtcaataaagacat |
271 |
Q |
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| T |
4096083 |
tgactgcata--atatcaaaagaagaaggtgtcaataaagacat |
4096042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 441 - 564
Target Start/End: Complemental strand, 4095652 - 4095532
Alignment:
| Q |
441 |
acatattcatttttccttgcttttattgaactggtaccgatcatcaagtcaccatcccagctacaaggacaaggaggaccgcgagcttctacacggtgac |
540 |
Q |
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| T |
4095652 |
acatattcatttttccttgcttttattgaactggtaccgatca---agtcaccatcccagctacaaggacaaggaggaccgcgagcatctacacggtgac |
4095556 |
T |
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| Q |
541 |
catataatctgcctaccaacaaac |
564 |
Q |
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| T |
4095555 |
catataatctgcctaccagcaaac |
4095532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 4097340 - 4097261
Alignment:
| Q |
26 |
ggtagataatactcctttaacaactctggtaatggcttctgcatttttcctgcaaagtgatataattaagttcccttcaa |
105 |
Q |
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| T |
4097340 |
ggtagatcatactcctttaacaactctggtaatggcttctgcatttttcctgcaaagtgatataattaagttcccttcaa |
4097261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 4095774 - 4095708
Alignment:
| Q |
373 |
ataaatgttcctctaaagtacaagtttacggtcctactcgtcattatgtctaagatggtgacctaatt |
440 |
Q |
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| T |
4095774 |
ataaatgttcctctaaagtacaagtttacg-tcctactcgtcattatgtctaagatggtgacctaatt |
4095708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 25797168 - 25797235
Alignment:
| Q |
165 |
gaaatacaaaccttttactttgttgaccaaccatttggttccgccttcaatactgttggacagtgact |
232 |
Q |
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| T |
25797168 |
gaaatacaaaccttttaatttgttgacgagccatttggttcctccttcaatgctgcttgacagtgact |
25797235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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