View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7994_high_1 (Length: 674)

Name: NF7994_high_1
Description: NF7994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7994_high_1
NF7994_high_1
[»] chr3 (1 HSPs)
chr3 (5-642)||(45381261-45381897)


Alignment Details
Target: chr3 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 5 - 642
Target Start/End: Complemental strand, 45381897 - 45381261
Alignment:
Q  5 agtttcgtgttatacttatggcaaagaaagcaatgtttgaatattgttgtagacattaatgttggtactaaaactatgaagctaacctgaagaaaattca 104  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45381897 agtttcatgttatacttatggcaaagaaagcaatgtttgaatattgttgtagacattaatgttggtactaaaactatgaagctaacctgaagaaaattca 45381798  T
Q  105 tgagtgtctccatggtagcagttctatctggaccaatttcataggacctaataacaaaaatttgcctaaacacaaaccttccttcaacaaatctcccatt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45381797 tgagtgtctccatggtagcagttctatctggaccaatttcataggacctaataacaaaaatctgcctaaacacaaaccttccttcaacaaatctcccatt 45381698  T
Q  205 ggtaacaagagcaacatctgttgtattttc---atttagcaattttttaggagcctctaccacttgtaaaccattcaccttagttccattaactgtgtcc 301  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45381697 ggtaacaagagcaacatctgttgtattttcttcatttagcaattttttaggagcctctaccacttgtaaaccattcaccttagttccattaattgtgtcc 45381598  T
Q  302 actttatgaaaagtactaccatgattagaatttgtaatcaccaatgaaaatcttcgtttgttgtggttgttcaatgtgtcattgttttgatgagaggaat 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45381597 actttatgaaaagtactaccatgattagaatttgtaatcaccaatgaaaatcttcgtttgttgtggttgttcaatgtgtcattgttttgatgagaggaat 45381498  T
Q  402 taaaattcacctccaaaaccttccttgagttgatcatattttccttctttgcattgctcacattccaattcccttgtaagccaatgttgctgattgttgc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45381497 taaaattcacctccaaaaccttccttgagttgatcatattttccttctttgcattgctcacattccaattcccttgtaagccaatgttgctgattgttgc 45381398  T
Q  502 cattgaaattataaaacaatgcaaatcgcaaggaaactttataagccagcctagttagaattcaaaaactaggaaaagtggaaaaagtaatatgttacat 601  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  45381397 cattgaaattataaaacaatgcaaatcacaaggaaactttataagccagcctagttagaattcaaaaactaggaaaagtggaaaaagta--atgttacat 45381300  T
Q  602 ataaatctagctcatgtttcttgtggaagagggattgatta 642  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  45381299 ataaatctagctc--gtttcttgtggaagagggattgatta 45381261  T

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