View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7994_high_14 (Length: 256)

Name: NF7994_high_14
Description: NF7994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7994_high_14
NF7994_high_14
[»] chr6 (14 HSPs)
chr6 (12-140)||(34873027-34873156)
chr6 (143-256)||(1376438-1376551)
chr6 (143-256)||(1384186-1384299)
chr6 (143-248)||(31869147-31869252)
chr6 (148-240)||(27612962-27613054)
chr6 (145-248)||(13423048-13423151)
chr6 (143-240)||(28630186-28630283)
chr6 (148-227)||(33651121-33651200)
chr6 (143-208)||(9082950-9083015)
chr6 (144-204)||(16337142-16337202)
chr6 (143-256)||(6531067-6531181)
chr6 (145-240)||(31760176-31760271)
chr6 (81-125)||(9919200-9919244)
chr6 (198-248)||(12588317-12588367)
[»] chr1 (28 HSPs)
chr1 (142-240)||(12999708-12999806)
chr1 (143-246)||(30973634-30973737)
chr1 (145-256)||(49931627-49931736)
chr1 (142-248)||(33076199-33076305)
chr1 (150-248)||(49446687-49446789)
chr1 (143-246)||(30536071-30536172)
chr1 (152-227)||(49020301-49020376)
chr1 (150-240)||(34817938-34818028)
chr1 (143-240)||(26501173-26501270)
chr1 (150-227)||(29359844-29359921)
chr1 (142-240)||(11947883-11947981)
chr1 (150-242)||(32831061-32831153)
chr1 (150-256)||(30745060-30745164)
chr1 (150-256)||(30766511-30766615)
chr1 (150-220)||(29877405-29877475)
chr1 (149-211)||(4629641-4629703)
chr1 (141-219)||(30519509-30519587)
chr1 (186-248)||(50242390-50242452)
chr1 (183-256)||(740880-740953)
chr1 (183-248)||(49570076-49570141)
chr1 (152-240)||(1689477-1689565)
chr1 (184-240)||(36750412-36750468)
chr1 (142-256)||(50775042-50775154)
chr1 (140-210)||(11597754-11597824)
chr1 (198-240)||(44517903-44517945)
chr1 (143-248)||(18434874-18434979)
chr1 (200-248)||(17082686-17082734)
chr1 (184-248)||(23665653-23665717)
[»] chr3 (34 HSPs)
chr3 (143-240)||(49761073-49761170)
chr3 (143-248)||(37894128-37894233)
chr3 (145-248)||(48944599-48944702)
chr3 (143-240)||(52100348-52100445)
chr3 (144-248)||(16479712-16479816)
chr3 (147-240)||(23868869-23868962)
chr3 (142-240)||(33796354-33796452)
chr3 (143-256)||(52485546-52485657)
chr3 (142-248)||(54099242-54099348)
chr3 (143-248)||(45186438-45186543)
chr3 (150-248)||(36755944-36756042)
chr3 (150-248)||(51698938-51699036)
chr3 (150-227)||(1436917-1436994)
chr3 (177-246)||(45657690-45657759)
chr3 (142-248)||(26772448-26772555)
chr3 (142-248)||(34592144-34592250)
chr3 (159-248)||(26550317-26550406)
chr3 (152-248)||(36907120-36907216)
chr3 (184-248)||(52714813-52714877)
chr3 (143-240)||(35376968-35377065)
chr3 (195-248)||(48287751-48287804)
chr3 (143-234)||(29780991-29781082)
chr3 (184-235)||(49021804-49021855)
chr3 (143-256)||(36121894-36122005)
chr3 (151-246)||(47742364-47742459)
chr3 (198-248)||(12762631-12762681)
chr3 (184-242)||(29916955-29917013)
chr3 (184-242)||(29966108-29966166)
chr3 (195-240)||(52963254-52963299)
chr3 (187-227)||(5527444-5527484)
chr3 (198-256)||(21196197-21196254)
chr3 (184-240)||(44962113-44962169)
chr3 (146-178)||(51771354-51771386)
chr3 (142-210)||(52089820-52089888)
[»] chr8 (28 HSPs)
chr8 (143-247)||(33539486-33539590)
chr8 (140-248)||(43715954-43716062)
chr8 (144-248)||(25830133-25830237)
chr8 (142-246)||(67046-67150)
chr8 (142-248)||(35792118-35792224)
chr8 (142-248)||(12656002-12656108)
chr8 (150-248)||(6440161-6440259)
chr8 (150-248)||(35067240-35067338)
chr8 (150-256)||(41639691-41639797)
chr8 (150-256)||(42786551-42786657)
chr8 (150-240)||(5574343-5574433)
chr8 (142-235)||(3270766-3270859)
chr8 (145-248)||(7814476-7814584)
chr8 (153-246)||(33100367-33100460)
chr8 (150-234)||(39453210-39453294)
chr8 (150-240)||(3413086-3413176)
chr8 (145-240)||(7795188-7795288)
chr8 (173-248)||(7777098-7777171)
chr8 (142-219)||(36969560-36969637)
chr8 (145-256)||(8671444-8671553)
chr8 (144-212)||(12339046-12339113)
chr8 (183-247)||(42619907-42619971)
chr8 (150-248)||(45405611-45405709)
chr8 (184-248)||(6972234-6972298)
chr8 (144-248)||(38675683-38675787)
chr8 (197-248)||(10902784-10902835)
chr8 (151-240)||(36611973-36612062)
chr8 (198-246)||(12734953-12735001)
[»] chr4 (26 HSPs)
chr4 (143-256)||(1795868-1795979)
chr4 (143-248)||(49585074-49585179)
chr4 (144-248)||(50980670-50980774)
chr4 (144-248)||(11546788-11546892)
chr4 (144-248)||(55609052-55609156)
chr4 (152-246)||(48649600-48649694)
chr4 (145-248)||(193612-193715)
chr4 (144-248)||(44257618-44257721)
chr4 (143-248)||(36123347-36123451)
chr4 (144-227)||(19165319-19165403)
chr4 (150-248)||(16019556-16019654)
chr4 (150-246)||(47015087-47015183)
chr4 (148-245)||(32224014-32224110)
chr4 (159-248)||(46665097-46665186)
chr4 (150-246)||(15522436-15522532)
chr4 (144-224)||(34363655-34363735)
chr4 (150-234)||(34757802-34757886)
chr4 (150-234)||(34759076-34759160)
chr4 (185-256)||(39478508-39478579)
chr4 (142-248)||(50831641-50831747)
chr4 (143-211)||(624198-624266)
chr4 (185-246)||(10474041-10474102)
chr4 (143-256)||(9118751-9118862)
chr4 (198-256)||(12138926-12138983)
chr4 (172-248)||(31574855-31574931)
chr4 (144-240)||(42491161-42491257)
[»] chr2 (27 HSPs)
chr2 (143-240)||(45420223-45420320)
chr2 (142-248)||(3771451-3771557)
chr2 (143-256)||(12784283-12784396)
chr2 (147-248)||(4657381-4657482)
chr2 (143-246)||(17999564-17999667)
chr2 (144-240)||(1040601-1040697)
chr2 (143-248)||(29449291-29449395)
chr2 (150-256)||(42532632-42532736)
chr2 (143-256)||(40700269-40700380)
chr2 (150-227)||(21738511-21738588)
chr2 (150-240)||(7084608-7084698)
chr2 (150-248)||(19843564-19843662)
chr2 (150-238)||(26290744-26290832)
chr2 (150-233)||(43658605-43658688)
chr2 (184-256)||(33616539-33616611)
chr2 (142-225)||(4319809-4319892)
chr2 (150-240)||(12070935-12071025)
chr2 (149-254)||(5031998-5032102)
chr2 (143-219)||(40357973-40358049)
chr2 (184-227)||(6336351-6336394)
chr2 (183-234)||(18737800-18737851)
chr2 (184-247)||(45259216-45259279)
chr2 (142-248)||(27490616-27490722)
chr2 (143-248)||(14328461-14328566)
chr2 (172-217)||(18982951-18982996)
chr2 (184-248)||(40599208-40599270)
chr2 (151-219)||(39309518-39309586)
[»] scaffold0053 (1 HSPs)
scaffold0053 (144-248)||(12577-12681)
[»] chr5 (17 HSPs)
chr5 (144-248)||(22098335-22098439)
chr5 (145-246)||(32639125-32639226)
chr5 (141-240)||(16690587-16690686)
chr5 (144-248)||(38293245-38293350)
chr5 (12-64)||(27947316-27947368)
chr5 (150-256)||(38493698-38493803)
chr5 (147-248)||(40364648-40364749)
chr5 (150-246)||(9168061-9168156)
chr5 (144-256)||(40829488-40829598)
chr5 (150-234)||(884535-884619)
chr5 (152-220)||(14321850-14321918)
chr5 (159-210)||(26686996-26687047)
chr5 (159-210)||(26956727-26956778)
chr5 (152-210)||(34940751-34940809)
chr5 (143-224)||(4088547-4088628)
chr5 (149-256)||(6940042-6940148)
chr5 (195-248)||(41699533-41699586)
[»] chr7 (18 HSPs)
chr7 (150-248)||(35822868-35822966)
chr7 (153-240)||(44496699-44496786)
chr7 (144-248)||(31398204-31398308)
chr7 (152-240)||(41590415-41590503)
chr7 (143-248)||(48145604-48145697)
chr7 (142-248)||(26018120-26018226)
chr7 (184-246)||(42598135-42598197)
chr7 (148-240)||(41589977-41590066)
chr7 (184-248)||(40854582-40854646)
chr7 (150-256)||(36352477-36352582)
chr7 (150-256)||(41430045-41430149)
chr7 (150-256)||(42584876-42584980)
chr7 (153-246)||(44651126-44651220)
chr7 (142-240)||(46259979-46260075)
chr7 (150-248)||(34507099-34507197)
chr7 (172-256)||(19562262-19562346)
chr7 (154-256)||(46829552-46829653)
chr7 (182-234)||(47012495-47012547)
[»] scaffold0687 (1 HSPs)
scaffold0687 (145-248)||(7139-7247)
[»] scaffold0662 (1 HSPs)
scaffold0662 (150-246)||(1226-1322)
[»] scaffold0013 (1 HSPs)
scaffold0013 (186-248)||(94811-94873)


Alignment Details
Target: chr6 (Bit Score: 102; Significance: 9e-51; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 34873027 - 34873156
Alignment:
Q  12 tgagatgaaatgataatgcaaagacgagaatttcaaaaacaaacggcatgtatggtttttaattatgaaatagaactgatgtctccgtagtaaactaagg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||    
T  34873027 tgagatgaaatgataatgcaaagacgagaatttcaaaaacaaacggcatgtatggattttgattatgaaatagaactgatgcctccgtagtaaactaagg 34873126  T
Q  112 tagatgataga-tatatattagccattgtt 140  Q
    ||| ||||||| ||| ||||||||||||||    
T  34873127 tagttgatagattatgtattagccattgtt 34873156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 143 - 256
Target Start/End: Complemental strand, 1376551 - 1376438
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatata 242  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |    
T  1376551 agagtagtgttatttgaacatcaatttgcttgacaactaaatggacaaccacatttttacaaagaaaaatatgtattgacacaaatataaaagtaataga 1376452  T
Q  243 gagagataaagtaa 256  Q
    ||||||||||||||    
T  1376451 gagagataaagtaa 1376438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 143 - 256
Target Start/End: Complemental strand, 1384299 - 1384186
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatata 242  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |    
T  1384299 agagtagtgttatttgaacatcaatttgcttgacaactaaatggacaaccacatttttacaaagaaaaatatgtattgacacaaatataaaagtaataga 1384200  T
Q  243 gagagataaagtaa 256  Q
    ||||||||||||||    
T  1384199 gagagataaagtaa 1384186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 248
Target Start/End: Complemental strand, 31869252 - 31869147
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatata 242  Q
    |||||||||||||||||||||| |||||||||||||  |||| ||||  |   ||||||||||| ||||||||||||||||| || |||||||||||| |    
T  31869252 agagtagtgttatttgaacatctatttgcttgacaatcaaatagacactcttgtttttacaaaggaaaatatgtattggcacgaaaatcaaagtaataga 31869153  T
Q  243 gagaga 248  Q
    ||||||    
T  31869152 gagaga 31869147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 27613054 - 27612962
Alignment:
Q  148 agtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    ||||||||||||||||| ||||| |||||||  |||| |||||||| || ||||||||||||||||||||||| ||| || ||||||||||||    
T  27613054 agtgttatttgaacatctatttgtttgacaatcaaatggacaaccatatgtttacaaagaaaaatatgtattgacacgaaaatcaaagtaata 27612962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 248
Target Start/End: Complemental strand, 13423151 - 13423048
Alignment:
Q  145 agtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatataga 244  Q
    |||||||||||||||||||| ||||  |||||||| || | |||||| | ||||||||||||||||||||||||||||||||| |  ||| ||||| |||    
T  13423151 agtagtgttatttgaacatccatttatttgacaaccaagtggacaactatatttttacaaagaaaaatatgtattggcacaaaaactaaaataatagaga 13423052  T
Q  245 gaga 248  Q
    ||||    
T  13423051 gaga 13423048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 28630283 - 28630186
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    |||||| |||||| |||||||| |||||  |||||||||||| |||||||| ||||||||||| ||||  |||| |||||||||| ||||||||||||    
T  28630283 agagtaatgttatatgaacatctatttgtgtgacaactaaatagacaaccatatttttacaaataaaagcatgtgttggcacaaaaatcaaagtaata 28630186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 33651200 - 33651121
Alignment:
Q  148 agtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaa 227  Q
    ||||||||||||||||| ||||| |||||||  |||| |||||||| |||||||||||||||| |||||||||| |||||    
T  33651200 agtgttatttgaacatccatttgtttgacaatcaaatagacaaccatatttttacaaagaaaattatgtattggtacaaa 33651121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 9082950 - 9083015
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaa 208  Q
    |||||||||||||||||||||||||||   ||| ||| |||| |||||||||||||||||| ||||    
T  9082950 agagtagtgttatttgaacatcaatttatgtgataaccaaatggacaaccacatttttacacagaa 9083015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 16337202 - 16337142
Alignment:
Q  144 gagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaa 204  Q
    ||||||||||||||||||||| ||||  |||||||| |||| |||||||| ||||||||||    
T  16337202 gagtagtgttatttgaacatccatttaattgacaaccaaatagacaaccatatttttacaa 16337142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 256
Target Start/End: Original strand, 6531067 - 6531181
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaa-tatgtattggcacaaatatcaaagtaat-a 240  Q
    |||| ||||||||||||||| | ||||| |||| ||||||   |||||||| |  |||||||||||||| |||||||| |||| || ||||||| ||| |    
T  6531067 agaggagtgttatttgaacaaccatttggttgataactaatgggacaaccata-atttacaaagaaaaagtatgtatttgcacgaaaatcaaagcaataa 6531165  T
Q  241 tagagagataaagtaa 256  Q
    ||||||||||||||||    
T  6531166 tagagagataaagtaa 6531181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 31760176 - 31760271
Alignment:
Q  145 agtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    |||||||||||||||||||| ||||| |||||||| ||||  |||||||| ||| |||||| |||  ||| ||||| || ||| | ||||||||||    
T  31760176 agtagtgttatttgaacatccatttgtttgacaaccaaataaacaaccacgtttatacaaaaaaatgtatatattgacataaaaaccaaagtaata 31760271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 9919244 - 9919200
Alignment:
Q  81 atagaactgatgtctccgtagtaaactaaggtagatgatagatat 125  Q
    |||||| ||||| ||||||||||||||||||||| ||||||||||    
T  9919244 atagaagtgatgcctccgtagtaaactaaggtagttgatagatat 9919200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 12588317 - 12588367
Alignment:
Q  198 tttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    |||||||||||| ||||||| ||||||||| ||||||| |||| |||||||    
T  12588317 tttacaaagaaatatatgtagtggcacaaaaatcaaagcaatagagagaga 12588367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 12999708 - 12999806
Alignment:
Q  142 tagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12999708 tagagtagtgttatttgaacatcaatttgcttgacaactaaatggacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 12999806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 30973737 - 30973634
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatata 242  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| |    
T  30973737 agagtagtgttatttgaacatcaatttgcttgacaactaaatggacaatcacatttttacaaagaaaagtatgtattgacacaaatatcaaagtaataga 30973638  T
Q  243 gaga 246  Q
    ||||    
T  30973637 gaga 30973634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 49931736 - 49931627
Alignment:
Q  145 agtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatataga 244  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||   ||||    
T  49931736 agtagtgttatttgaacatcaatttgcttgataactaaatggacaaccacatttttccaaagaaaagtatgtattggcacaaatatcaaagta--ttaga 49931639  T
Q  245 gagataaagtaa 256  Q
    ||||||||||||    
T  49931638 gagataaagtaa 49931627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 142 - 248
Target Start/End: Complemental strand, 33076305 - 33076199
Alignment:
Q  142 tagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatat 241  Q
    ||||| |||||||||||||||||||||||||||| || ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||     
T  33076305 tagagcagtgttatttgaacatcaatttgcttgataattaaatggacaaccacaattttacaaagaaaattatgtattggcacaaatatcaaagtaatag 33076206  T
Q  242 agagaga 248  Q
    |||||||    
T  33076205 agagaga 33076199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 49446687 - 49446789
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaa----tatgtattggcacaaatatcaaagtaatatagag 245  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    ||||||||||||||||||||||||||||| ||||    
T  49446687 tgttatttgaacatcaatttgcttgacaactaaatggacaatcacatttttacaaagaaaaatatgtatgtattggcacaaatatcaaagtaatagagag 49446786  T
Q  246 aga 248  Q
    |||    
T  49446787 aga 49446789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 30536172 - 30536071
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatata 242  Q
    ||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||| ||||  ||||||||||||||||||||||| |    
T  30536172 agagtagtgttatttgaacatcaatttgcttaacaactaaacggacaaccacatttttacaaagaaaagtatg--ttggcacaaatatcaaagtaataga 30536075  T
Q  243 gaga 246  Q
    ||||    
T  30536074 gaga 30536071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 49020301 - 49020376
Alignment:
Q  152 ttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaa 227  Q
    ||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||    
T  49020301 ttatttgaacatcaatttggttgacaaccaaattgacaaccatatttttacaaagaaaaatatatattggcacaaa 49020376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 34817938 - 34818028
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    ||||||||||||||||||||  |||||||  | ||||||||||| |||||||||||||||||||||| |||||||||| ||||||| ||||    
T  34817938 tgttatttgaacatcaatttagttgacaatcatattgacaaccatatttttacaaagaaaaatatgtgttggcacaaaaatcaaagcaata 34818028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 26501173 - 26501270
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    ||||| ||||||||||||||||||| | | | ||||| ||||||||||||||||||||| |||||||  | |||||||||||| | | ||||||||||    
T  26501173 agagtggtgttatttgaacatcaatgtacgttacaaccaaattgacaaccacatttttagaaagaaatgtgtgtattggcacagaaaccaaagtaata 26501270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 29359921 - 29359844
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaa 227  Q
    ||||||||||||||||||||| |||||||| | ||||||||||| ||||||| |||||||| ||||| ||| ||||||    
T  29359921 tgttatttgaacatcaatttgattgacaaccacattgacaaccatatttttataaagaaaagtatgtgttgacacaaa 29359844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 11947981 - 11947883
Alignment:
Q  142 tagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    ||||||| |||||| |||||||| |||||  |||||||||||| |||||||| ||||||||||| ||||  |||| || ||||||| || |||||||||    
T  11947981 tagagtaatgttatatgaacatctatttgtgtgacaactaaatagacaaccatatttttacaaataaaagcatgtgtttgcacaaaaattaaagtaata 11947883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 242
Target Start/End: Original strand, 32831061 - 32831153
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatata 242  Q
    |||| |||||||||| |||||| ||||||| |||| ||||||||  ||||||||||||||| |||| |||| ||  || ||||||||||||||    
T  32831061 tgttgtttgaacatctatttgcctgacaaccaaatagacaaccatgtttttacaaagaaaagtatggattgacatgaaaatcaaagtaatata 32831153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 30745164 - 30745060
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagagat 249  Q
    |||||||||||||| |||||| |||||||| | || |||||||| | | |||||||||||| ||||||||| |||||| | ||||  |  ||||||||||    
T  30745164 tgttatttgaacattaatttgattgacaaccatatagacaaccatactcttacaaagaaaattatgtattgacacaaaaaccaaa--acaatagagagat 30745067  T
Q  250 aaagtaa 256  Q
    |||||||    
T  30745066 aaagtaa 30745060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 30766615 - 30766511
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagagat 249  Q
    |||||||||||||| |||||| |||||||| | || |||||||| | | |||||||||||| ||||||||| |||||| | ||||  |  ||||||||||    
T  30766615 tgttatttgaacattaatttgattgacaaccatatagacaaccatactcttacaaagaaaattatgtattgacacaaaaaccaaa--acaatagagagat 30766518  T
Q  250 aaagtaa 256  Q
    |||||||    
T  30766517 aaagtaa 30766511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 29877475 - 29877405
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattg 220  Q
    ||||||||||||||||||||  |||||||  | || |||||||| |||||||||||||||| |||||||||    
T  29877475 tgttatttgaacatcaattttattgacaatcatatggacaaccatatttttacaaagaaaattatgtattg 29877405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 4629641 - 4629703
Alignment:
Q  149 gtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaa 211  Q
    |||||||||||||| | ||| | ||||||||| | ||||||||||||| ||||||||||||||    
T  4629641 gtgttatttgaacaactattagattgacaacttatttgacaaccacatctttacaaagaaaaa 4629703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 30519509 - 30519587
Alignment:
Q  141 ctagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtatt 219  Q
    |||||| | |||||||||||||||||| || |||||||| | || ||||||||  |||||||||||||||  |||||||    
T  30519509 ctagagcaatgttatttgaacatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaatcatgtatt 30519587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 50242452 - 50242390
Alignment:
Q  186 gacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    |||||||| || ||||||||||||| ||||||||||||| || | |||||||||| |||||||    
T  50242452 gacaaccatatatttacaaagaaaagtatgtattggcacgaaaaccaaagtaatagagagaga 50242390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 740880 - 740953
Alignment:
Q  183 attgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagagataaagtaa 256  Q
    ||||||||||| | |||||||||||||| ||||||||  |||||| | |||| ||||| ||||||| |||||||    
T  740880 attgacaaccataattttacaaagaaaattatgtattaacacaaaaaccaaaataatagagagagagaaagtaa 740953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 49570141 - 49570076
Alignment:
Q  183 attgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    ||||||||||| ||||||| |||||||| ||||| |||||||||| ||||||  |||| |||||||    
T  49570141 attgacaaccatatttttataaagaaaagtatgtgttggcacaaaaatcaaaacaatagagagaga 49570076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 1689565 - 1689477
Alignment:
Q  152 ttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    |||| |||||||  |||||  ||||||||| || |||||||| ||||||| ||| |||| ||||| ||| |||||| ||||||||||||    
T  1689565 ttatatgaacatttatttgtgtgacaactatatagacaaccatatttttataaataaaagtatgtgttgacacaaaaatcaaagtaata 1689477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 36750412 - 36750468
Alignment:
Q  184 ttgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    |||||||||| |||||||||||||||| ||||| |||||||||| | ||||| ||||    
T  36750412 ttgacaaccatatttttacaaagaaaagtatgtgttggcacaaaaaacaaagcaata 36750468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 50775042 - 50775154
Alignment:
Q  142 tagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatat 241  Q
    |||||| |||||||||||||  | ||||| ||||||| |    ||||||||| | ||||||||||||||| |||| ||| |||||| | ||||| |  ||    
T  50775042 tagagttgtgttatttgaacgaccatttgattgacaaattttgtgacaaccataattttacaaagaaaaagatgtgttgacacaaaaaccaaagca--at 50775139  T
Q  242 agagagataaagtaa 256  Q
    |||||||||||||||    
T  50775140 agagagataaagtaa 50775154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 11597824 - 11597754
Alignment:
Q  140 tctagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaa 210  Q
    |||||||  |||||||||||||||| ||||||||||||||| |   |||||||| |  |||||||||||||    
T  11597824 tctagaggtgtgttatttgaacatccatttgcttgacaacttatgggacaaccatagatttacaaagaaaa 11597754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 44517903 - 44517945
Alignment:
Q  198 tttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    ||||||||||||||||||||||| |||||| |||||| |||||    
T  44517903 tttacaaagaaaaatatgtattgacacaaaaatcaaaataata 44517945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 248
Target Start/End: Complemental strand, 18434979 - 18434874
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatata 242  Q
    ||||| |||||||||||| ||| ||||   ||||||||    ||||||||| | |||| |||||||||  ||||||||||||||| ||||||  |||| |    
T  18434979 agagttgtgttatttgaaaatctatttagatgacaacttttgtgacaaccaaaattttgcaaagaaaatgatgtattggcacaaaaatcaaaacaataaa 18434880  T
Q  243 gagaga 248  Q
    ||||||    
T  18434879 gagaga 18434874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 17082686 - 17082734
Alignment:
Q  200 tacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    ||||||||||  || ||| |||||||||||||||||||||| |||||||    
T  17082686 tacaaagaaatttaggtagtggcacaaatatcaaagtaatagagagaga 17082734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 23665653 - 23665717
Alignment:
Q  184 ttgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    |||||||||| |||||||||||||||| ||||| ||| |||||| | ||||| |||  |||||||    
T  23665653 ttgacaaccatatttttacaaagaaaagtatgtgttgacacaaaaaccaaagcaattgagagaga 23665717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 49761073 - 49761170
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49761073 agagtagtgttatttcaacatcaatttgcttgacaactaaatggacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 49761170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 143 - 248
Target Start/End: Original strand, 37894128 - 37894233
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatata 242  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |    
T  37894128 agagtagtgttatttgaacatcaatttgcttgacaactaaatggacaaccacatttttaccaagaaaagtatgtattgacacaaatatcaaagtaataga 37894227  T
Q  243 gagaga 248  Q
    ||||||    
T  37894228 gagaga 37894233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 48944599 - 48944702
Alignment:
Q  145 agtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatataga 244  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| || |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48944599 agtagtgttatttgaacatcaatttgcttgacaactaaatgaacaatcatatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatagaga 48944698  T
Q  245 gaga 248  Q
    ||||    
T  48944699 gaga 48944702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 52100445 - 52100348
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  52100445 agagtagtgttatttgaacatcaatttgcttgacaattaaatggacaatcatatttttacaaagaaaaatatgtattagcataaatatcaaagtaata 52100348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 144 - 248
Target Start/End: Complemental strand, 16479816 - 16479712
Alignment:
Q  144 gagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatag 243  Q
    ||||||||||||||||||||| |||||||||||||| |||| |||||||   ||||||||||||||||||||||||||||| || |||||||||||| ||    
T  16479816 gagtagtgttatttgaacatctatttgcttgacaaccaaatagacaaccttgtttttacaaagaaaaatatgtattggcacgaaaatcaaagtaatagag 16479717  T
Q  244 agaga 248  Q
    |||||    
T  16479716 agaga 16479712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 23868869 - 23868962
Alignment:
Q  147 tagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    |||||||||||||||||| |||||||||||||| |||| ||||| || |||||||||| |||||| ||||||||||||||| |||||| |||||    
T  23868869 tagtgttatttgaacatctatttgcttgacaaccaaatagacaatcatatttttacaaggaaaaaaatgtattggcacaaaaatcaaaataata 23868962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 33796452 - 33796354
Alignment:
Q  142 tagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    ||||||| ||||||||||| ||||||||| |||||||  | ||||||||||| ||||||| |||||||| ||||| |||||||||| ||||||||||||    
T  33796452 tagagtaatgttatttgaaaatcaatttggttgacaatcacattgacaaccatatttttataaagaaaagtatgtgttggcacaaaaatcaaagtaata 33796354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 256
Target Start/End: Complemental strand, 52485657 - 52485546
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatata 242  Q
    ||||| |||||||||||||||| ||||| ||||||||  ||| |||||||| |||||||||||||||| ||||||||||||| || | ||||| |  |||    
T  52485657 agagttgtgttatttgaacatctatttgtttgacaacctaatggacaaccatatttttacaaagaaaagtatgtattggcacgaaaaccaaagca--ata 52485560  T
Q  243 gagagataaagtaa 256  Q
    ||||||||||||||    
T  52485559 gagagataaagtaa 52485546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 248
Target Start/End: Original strand, 54099242 - 54099348
Alignment:
Q  142 tagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatat 241  Q
    ||||||| ||||||||||||||||||||| ||||||| || |||||||| || |||||||||||||||| ||| | |||||| ||| ||||||| ||||     
T  54099242 tagagtaatgttatttgaacatcaatttggttgacaattacattgacaatcatatttttacaaagaaaagtatatgttggcataaaaatcaaagcaatag 54099341  T
Q  242 agagaga 248  Q
    |||||||    
T  54099342 agagaga 54099348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 248
Target Start/End: Original strand, 45186438 - 45186543
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatata 242  Q
    |||||||||||||| ||||||||||||| |||||||| |||| |||||||| | |||||||| ||||| ||||||||| ||  || |||||||||||| |    
T  45186438 agagtagtgttattcgaacatcaatttgtttgacaaccaaatggacaaccatacttttacaacgaaaagtatgtattgacaagaaaatcaaagtaataga 45186537  T
Q  243 gagaga 248  Q
    ||||||    
T  45186538 gagaga 45186543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 36755944 - 36756042
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    ||||||||||| ||||||||| |||||||  | ||||||||||| |||||||||||||||| ||| | |||||||||| ||||||| |||| |||||||    
T  36755944 tgttatttgaatatcaatttgattgacaatcacattgacaaccatatttttacaaagaaaagtatatgttggcacaaaaatcaaagcaatagagagaga 36756042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 51699036 - 51698938
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    ||||||||||||||||||||| |||||||| | ||||||||||| ||| |||||||||||| ||||| |||||||||| | ||||  |||| |||||||    
T  51699036 tgttatttgaacatcaatttggttgacaaccacattgacaaccatattcttacaaagaaaagtatgtgttggcacaaaaaccaaatcaatagagagaga 51698938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 1436994 - 1436917
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaa 227  Q
    ||||||||||||||||||||| || ||||| | ||||||||||| |||||||||||||||| ||||| ||||||||||    
T  1436994 tgttatttgaacatcaatttggtttacaaccacattgacaaccatatttttacaaagaaaagtatgtgttggcacaaa 1436917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 45657690 - 45657759
Alignment:
Q  177 aactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagaga 246  Q
    |||||||||||||| ||||||| || |||||||| ||||||||||||||||||||||||||||| |||||    
T  45657690 aactaaattgacaatcacatttatataaagaaaagtatgtattggcacaaatatcaaagtaatagagaga 45657759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 248
Target Start/End: Complemental strand, 26772555 - 26772448
Alignment:
Q  142 tagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttac-aaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    ||||||||||||||||||||||| ||||| |||||| | |||| |||||||  |||||||| |||||||| ||||||||| ||| || |||||| |||||    
T  26772555 tagagtagtgttatttgaacatctatttgtttgacatccaaatagacaaccttatttttacaaaagaaaactatgtattgacacgaaaatcaaaataata 26772456  T
Q  241 tagagaga 248  Q
     |||||||    
T  26772455 gagagaga 26772448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 248
Target Start/End: Complemental strand, 34592250 - 34592144
Alignment:
Q  142 tagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatat 241  Q
    ||||||||||||||||||||||| ||||| ||||||   |||| ||||||    ||||||||||||||| ||||||||| ||| || ||||||||||||     
T  34592250 tagagtagtgttatttgaacatctatttgtttgacagtcaaatagacaacattgtttttacaaagaaaagtatgtattgacacgaaaatcaaagtaataa 34592151  T
Q  242 agagaga 248  Q
    |||||||    
T  34592150 agagaga 34592144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 26550406 - 26550317
Alignment:
Q  159 aacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    ||||||||||||  ||||||| |||| ||||| ||||||||||||||||||| | |||| | ||||||| || ||||||||| |||||||    
T  26550406 aacatcaatttgtgtgacaaccaaatggacaatcacatttttacaaagaaaagtgtgtactagcacaaaaattaaagtaatagagagaga 26550317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 36907216 - 36907120
Alignment:
Q  152 ttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    ||||||||||||| ||||| ||  ||||  ||| |||||||| ||||||||||||||| ||||||||| |||| || | |||||||||| |||||||    
T  36907216 ttatttgaacatctatttgtttagcaacctaatggacaaccatatttttacaaagaaatatatgtatttgcacgaaaaacaaagtaatagagagaga 36907120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 52714877 - 52714813
Alignment:
Q  184 ttgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    |||||||||| |||||||||||||||| ||||| |||||||||| ||||||| |||| |||||||    
T  52714877 ttgacaaccatatttttacaaagaaaagtatgtgttggcacaaaaatcaaagcaatagagagaga 52714813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 35376968 - 35377065
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    ||||| |||||||||||||||| ||||   ||||||||    ||||||||| | ||||||||||||||  ||||||||||||||| ||||||| ||||    
T  35376968 agagttgtgttatttgaacatccatttagatgacaacttttgtgacaaccaaaattttacaaagaaaatgatgtattggcacaaaaatcaaagcaata 35377065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 48287804 - 48287751
Alignment:
Q  195 atttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    ||||||||||||||||||||||||| |||| || |||||||||||| |||||||    
T  48287804 atttttacaaagaaaaatatgtattagcacgaaaatcaaagtaatagagagaga 48287751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 234
Target Start/End: Complemental strand, 29781082 - 29780991
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaa 234  Q
    |||||| ||||||||| ||||||||||| |||||||  | || ||||| || ||||||| |||||||| | ||||||||||| || ||||||    
T  29781082 agagtaatgttatttggacatcaatttgattgacaatcatatggacaatcatatttttataaagaaaagtttgtattggcacgaaaatcaaa 29780991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 49021855 - 49021804
Alignment:
Q  184 ttgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaag 235  Q
    |||||||||| |||||||||||||||| ||||| |||||||||| |||||||    
T  49021855 ttgacaaccatatttttacaaagaaaagtatgtgttggcacaaaaatcaaag 49021804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 256
Target Start/End: Complemental strand, 36122005 - 36121894
Alignment:
Q  143 agagtagtgttatttgaacatc-aatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatg-tattggcacaaatatcaaagtaata 240  Q
    |||| ||||||||||||||| | |||||| | ||||||| | |||||||||| ||||| |||||||||||| || |||||||||||| |||| || ||||    
T  36122005 agaggagtgttatttgaacaaccaatttggt-gacaacttatttgacaaccatatttt-acaaagaaaaatgtggtattggcacaaaaatcatagcaata 36121908  T
Q  241 tagagagataaagtaa 256  Q
      ||||||||||||||    
T  36121907 --gagagataaagtaa 36121894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 246
Target Start/End: Complemental strand, 47742459 - 47742364
Alignment:
Q  151 gttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagaga 246  Q
    |||||||||||| ||||||| |||||||| | ||| ||||| | |||||||| |||| || ||||| |||| ||||| || |||| |||| |||||    
T  47742459 gttatttgaacagcaatttggttgacaaccacattaacaactatatttttacgaagagaagtatgtgttggaacaaaaattaaagcaatagagaga 47742364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 12762631 - 12762681
Alignment:
Q  198 tttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    ||||||||||||||||  ||||| |||||| |||||||||||| |||||||    
T  12762631 tttacaaagaaaaatagttattgacacaaaaatcaaagtaataaagagaga 12762681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 29916955 - 29917013
Alignment:
Q  184 ttgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatata 242  Q
    |||||||||| |||||||||||| ||| ||||| ||| |||||| ||||||| ||||||    
T  29916955 ttgacaaccatatttttacaaaggaaagtatgtgttgacacaaaaatcaaagcaatata 29917013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 29966108 - 29966166
Alignment:
Q  184 ttgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatata 242  Q
    |||||||||| |||||||||||| ||| ||||| ||| |||||| ||||||| ||||||    
T  29966108 ttgacaaccatatttttacaaaggaaagtatgtgttgacacaaaaatcaaagcaatata 29966166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 52963254 - 52963299
Alignment:
Q  195 atttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    |||||||||||||||||||||||||| |||||| |  |||||||||    
T  52963254 atttttacaaagaaaaatatgtattgacacaaaaactaaagtaata 52963299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 5527484 - 5527444
Alignment:
Q  187 acaaccacatttttacaaagaaaaatatgtattggcacaaa 227  Q
    ||||||| ||||||||||||||| |||||||||| ||||||    
T  5527484 acaaccatatttttacaaagaaatatatgtattgacacaaa 5527444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 21196254 - 21196197
Alignment:
Q  198 tttacaaagaaaaa-tatgtattggcacaaatatcaaagtaatatagagagataaagtaa 256  Q
    |||||||||||||| |||||||| |||| || |||||||||  |||||||||||||||||    
T  21196254 tttacaaagaaaaaatatgtatttgcacgaaaatcaaagta--atagagagataaagtaa 21196197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 44962113 - 44962169
Alignment:
Q  184 ttgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    ||||||||||  |||||||||| ||||||||||||||  || || ||||||||||||    
T  44962113 ttgacaaccatgtttttacaaaaaaaaatatgtattgatacgaaaatcaaagtaata 44962169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 51771354 - 51771386
Alignment:
Q  146 gtagtgttatttgaacatcaatttgcttgacaa 178  Q
    ||||||||||||||||||| |||||||||||||    
T  51771354 gtagtgttatttgaacatctatttgcttgacaa 51771386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 52089820 - 52089888
Alignment:
Q  142 tagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaa 210  Q
    |||||||||||||||| |||||| |||   ||||||||||||| |||||    ||||||||||||||||    
T  52089820 tagagtagtgttatttaaacatctattaatttgacaactaaatagacaattttatttttacaaagaaaa 52089888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 33539590 - 33539486
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatata 242  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |    
T  33539590 agagtagtgttatttgaacatcaatttgcttgacaactaaatggacaaccacattttttcaaagaaaagtatgtattggcacaaatatcaaagtaataga 33539491  T
Q  243 gagag 247  Q
    |||||    
T  33539490 gagag 33539486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 140 - 248
Target Start/End: Complemental strand, 43716062 - 43715954
Alignment:
Q  140 tctagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaat 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||| |||||||||||||||||    
T  43716062 tctagagtagtgttatttgaacatcaatttgcttgacaactaaatggacaaccacatttttaccaagaaaagtatgtattggtacaaatatcaaagtaat 43715963  T
Q  240 atagagaga 248  Q
    | |||||||    
T  43715962 agagagaga 43715954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 144 - 248
Target Start/End: Original strand, 25830133 - 25830237
Alignment:
Q  144 gagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatag 243  Q
    ||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  25830133 gagtagtgttatttgaacatcaatttgtttaacaactaaatggacaaccacatttttacaaagaaaagtatgtattggcacaaatatcaaagtaatagag 25830232  T
Q  244 agaga 248  Q
    |||||    
T  25830233 agaga 25830237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 142 - 246
Target Start/End: Original strand, 67046 - 67150
Alignment:
Q  142 tagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatat 241  Q
    |||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||     
T  67046 tagagtagtgttatttgaacattaatttgcttgacaaccaaatagacaaccacatttttacaaagaaaatcatgtattggcacaaatatcaaagtaatag 67145  T
Q  242 agaga 246  Q
    |||||    
T  67146 agaga 67150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 142 - 248
Target Start/End: Complemental strand, 35792224 - 35792118
Alignment:
Q  142 tagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatat 241  Q
    ||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||  || |||| |||||||||||||||||||||||||||||     
T  35792224 tagaggagtgttatttgaacaccaatttgcttgacaactaaatggacaaccacatttttatcaaaaaaagtatgtattggcacaaatatcaaagtaatag 35792125  T
Q  242 agagaga 248  Q
    |||||||    
T  35792124 agagaga 35792118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 142 - 248
Target Start/End: Complemental strand, 12656108 - 12656002
Alignment:
Q  142 tagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatat 241  Q
    ||||||||||||||||||||||| |||||||||||||| |||| ||||||||  ||||||||||||||| |||| ||||||||||| || |||||||||     
T  12656108 tagagtagtgttatttgaacatctatttgcttgacaaccaaatagacaaccatgtttttacaaagaaaagtatgcattggcacaaaaatgaaagtaatag 12656009  T
Q  242 agagaga 248  Q
    |||||||    
T  12656008 agagaga 12656002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 6440259 - 6440161
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    ||||||||||||||||| ||| |||||||| ||||||||||||| |||||||||||||||| ||||||||| |||||| ||||||| || | |||||||    
T  6440259 tgttatttgaacatcaacttggttgacaaccaaattgacaaccatatttttacaaagaaaagtatgtattgacacaaaaatcaaagcaagaaagagaga 6440161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 35067338 - 35067240
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    ||||||||||||||||||||| |||||||| | ||||||||||| |||||||||||||||| ||||| |||||||||| | ||||| |||| |||||||    
T  35067338 tgttatttgaacatcaatttggttgacaaccacattgacaaccatatttttacaaagaaaagtatgtgttggcacaaaaaccaaagcaatagagagaga 35067240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 150 - 256
Target Start/End: Original strand, 41639691 - 41639797
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagagat 249  Q
    ||||||||||||||||||||| |||||||| |  |||||||||| |||||||||||||||| ||||| ||| |||||| ||||||| |||| |||||||     
T  41639691 tgttatttgaacatcaatttggttgacaaccacgttgacaaccatatttttacaaagaaaagtatgtgttgacacaaaaatcaaagcaatagagagagag 41639790  T
Q  250 aaagtaa 256  Q
    |||||||    
T  41639791 aaagtaa 41639797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 150 - 256
Target Start/End: Original strand, 42786551 - 42786657
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagagat 249  Q
    ||||||||||||||||| ||| |||||||| |||||||||| ||   ||||||||||||||||||||||||||||||| ||||||| || | |||||||     
T  42786551 tgttatttgaacatcaacttggttgacaaccaaattgacaatcatgattttacaaagaaaaatatgtattggcacaaaaatcaaagaaagagagagagaa 42786650  T
Q  250 aaagtaa 256  Q
    |||||||    
T  42786651 aaagtaa 42786657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 5574433 - 5574343
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    ||||||||||||||||||||| |||||||||| ||||||| ||| |||||||||||||||| ||||||||  |||||| |||||| |||||    
T  5574433 tgttatttgaacatcaatttggttgacaactatattgacacccatatttttacaaagaaaagtatgtattaacacaaaaatcaaaataata 5574343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 3270766 - 3270859
Alignment:
Q  142 tagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaag 235  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||||||||||| | ||||| ||| |||| |||| ||||||||||| |||||||    
T  3270766 tagagtaatgttatttgaacatcaacttggttgacaactaaattgacaaccataattttataaacaaaagtatggattggcacaaaaatcaaag 3270859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 7814476 - 7814584
Alignment:
Q  145 agtagtgttatttgaacatcaatttgcttgacaa-------ctaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagta 237  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||  |||||||||| |||| |||| || |||||||||||||    
T  7814476 agtagtgttatttgaacatcaatttgcttgacaaatgacaactaaattgacaaccacattt--acaaagaaaagtatgcattgacataaatatcaaagta 7814573  T
Q  238 atatagagaga 248  Q
    ||| |||||||    
T  7814574 atagagagaga 7814584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 153 - 246
Target Start/End: Original strand, 33100367 - 33100460
Alignment:
Q  153 tatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagaga 246  Q
    |||||||||||| ||||| |||||||| |||| |||||||  |||||||||||||||| ||||||||| |||||| |||||||||||| |||||    
T  33100367 tatttgaacatccatttgtttgacaaccaaatagacaaccttatttttacaaagaaaagtatgtattgacacaaaaatcaaagtaatagagaga 33100460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 39453210 - 39453294
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaa 234  Q
    ||||||||||||||||||||| |||||||| | |||||||| || |||||||||||||||| ||||||||| || ||| ||||||    
T  39453210 tgttatttgaacatcaatttgattgacaaccacattgacaatcatatttttacaaagaaaattatgtattgacagaaaaatcaaa 39453294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 3413086 - 3413176
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    ||||||||||||||||||||| |||||||| | |||||||  || ||||||||||||||||  ||||||||||||||| | ||||| ||||    
T  3413086 tgttatttgaacatcaatttggttgacaacaacattgacagtcatatttttacaaagaaaatcatgtattggcacaaaaaccaaagcaata 3413176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 7795188 - 7795288
Alignment:
Q  145 agtagtgttatttgaacatcaatttgcttgacaa-------ctaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagta 237  Q
    ||||||||||| ||||||||||||||||||||||       ||||||||||||| ||||||  |||||||||| |||| |||| ||||||||||||||||    
T  7795188 agtagtgttatatgaacatcaatttgcttgacaaatgacaactaaattgacaactacattt--acaaagaaaagtatgcattgacacaaatatcaaagta 7795285  T
Q  238 ata 240  Q
    |||    
T  7795286 ata 7795288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 7777098 - 7777171
Alignment:
Q  173 tgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    ||||||||||||||||||||||||||  |||||||||| |||| |||  ||||||||||||||||||| |||||||    
T  7777098 tgacaactaaattgacaaccacattt--acaaagaaaagtatgcattaacacaaatatcaaagtaatagagagaga 7777171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 36969560 - 36969637
Alignment:
Q  142 tagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtatt 219  Q
    |||||| |||||||||||||||| ||||| ||||||||| |   |||||||| ||||||||||||||| |||||||||    
T  36969560 tagagttgtgttatttgaacatccatttgtttgacaacttatgcgacaaccatatttttacaaagaaatatatgtatt 36969637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 8671444 - 8671553
Alignment:
Q  145 agtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatataga 244  Q
    |||| ||||||||||||||| ||||| || ||||  |||| |||| ||| ||||||||||| ||||| || |||||  ||||| |||||||||  |||||    
T  8671444 agtaatgttatttgaacatccatttgtttaacaatcaaatggacagccatatttttacaaaaaaaaaaatatattgatacaaaaatcaaagta--ataga 8671541  T
Q  245 gagataaagtaa 256  Q
    ||||||||||||    
T  8671542 gagataaagtaa 8671553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 12339046 - 12339113
Alignment:
Q  144 gagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaat 212  Q
    |||||||||||||||| ||||||||||  ||||||||||||  ||||||| ||||||||||||||||||    
T  12339046 gagtagtgttatttga-catcaatttgtgtgacaactaaatgaacaaccatatttttacaaagaaaaat 12339113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 42619907 - 42619971
Alignment:
Q  183 attgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagag 247  Q
    ||||||||||| |||||||||||||||| ||||| |||||||||| ||||||| |||| ||||||    
T  42619907 attgacaaccatatttttacaaagaaaagtatgtgttggcacaaaaatcaaagcaatagagagag 42619971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 45405709 - 45405611
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    |||||||||||||||||| || |||||||| | || |||||| | ||||||||||||||||  || ||||| ||| || ||||||| |||| |||||||    
T  45405709 tgttatttgaacatcaatgtgattgacaaccacatggacaactatatttttacaaagaaaatcatatattgacacgaaaatcaaagcaatagagagaga 45405611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 6972298 - 6972234
Alignment:
Q  184 ttgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    |||||||||| |||||||||||||||| ||||| |||||||||| | ||||| |||| |||||||    
T  6972298 ttgacaaccatatttttacaaagaaaagtatgtgttggcacaaaaaccaaagcaatagagagaga 6972234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 248
Target Start/End: Complemental strand, 38675787 - 38675683
Alignment:
Q  144 gagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatag 243  Q
    |||| |||||||||||||||| ||||  |||| ||  |||| |||||||| |  |||| |||||||| |||||||||||||||| | ||||| |||| ||    
T  38675787 gagttgtgttatttgaacatctatttatttgataatcaaatagacaaccataactttaaaaagaaaagtatgtattggcacaaaaaccaaagaaatagag 38675688  T
Q  244 agaga 248  Q
    |||||    
T  38675687 agaga 38675683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 10902835 - 10902784
Alignment:
Q  197 ttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    ||||||||||||||  ||||||||||||||| ||||||| |||| |||||||    
T  10902835 ttttacaaagaaaatgatgtattggcacaaaaatcaaagcaatagagagaga 10902784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 36611973 - 36612062
Alignment:
Q  151 gttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    ||||| ||||||||  ||||  ||| ||| |||| |||||||| ||||||  ||| |||| ||||| |||||||||| ||||||||||||    
T  36611973 gttatatgaacatctgtttgtgtgaaaaccaaatagacaaccatatttttttaaataaaagtatgtgttggcacaaaaatcaaagtaata 36612062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 12734953 - 12735001
Alignment:
Q  198 tttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagaga 246  Q
    ||||||| ||||| || |||||| |||||| ||||||||||||||||||    
T  12734953 tttacaatgaaaagtaggtattgacacaaaaatcaaagtaatatagaga 12735001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 143 - 256
Target Start/End: Original strand, 1795868 - 1795979
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatata 242  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||  |||    
T  1795868 agagtagtgttatttgaacatcaatttgcttaacaactaaatggacaaccacatttttaccaagaaaagtatgtattggcacaaatatcaaagta--ata 1795965  T
Q  243 gagagataaagtaa 256  Q
    ||||||||||||||    
T  1795966 gagagataaagtaa 1795979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 143 - 248
Target Start/End: Complemental strand, 49585179 - 49585074
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatata 242  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |    
T  49585179 agagtagtgttatttgaacattaatttgcttgacaactaaatggacaaccacatttttaccaagaaaagtatgtattggcacaaatatcaaagtaataga 49585080  T
Q  243 gagaga 248  Q
    ||||||    
T  49585079 gagaga 49585074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 144 - 248
Target Start/End: Complemental strand, 50980774 - 50980670
Alignment:
Q  144 gagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatag 243  Q
    ||||| |||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  50980774 gagtaatgttatttaaacatcaatttgctggacaactaaatggacaatcacatttttacaaagaaaagtatgtattggcacaaatatcaaagtaatatag 50980675  T
Q  244 agaga 248  Q
    |||||    
T  50980674 agaga 50980670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 144 - 248
Target Start/End: Original strand, 11546788 - 11546892
Alignment:
Q  144 gagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatag 243  Q
    |||||||||||||||||||||||||| ||||||||  |||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||    
T  11546788 gagtagtgttatttgaacatcaatttacttgacaatcaaatggacaaccacatttttacaaaaaaaattatgtattggcacaaatatcaaagtaatagag 11546887  T
Q  244 agaga 248  Q
    |||||    
T  11546888 agaga 11546892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 144 - 248
Target Start/End: Original strand, 55609052 - 55609156
Alignment:
Q  144 gagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatag 243  Q
    ||||||||||||||||||||| |||||||||||||| |||| |||||||   ||||||||||||||||||||||||||||| || |||||||||||| ||    
T  55609052 gagtagtgttatttgaacatctatttgcttgacaaccaaatagacaaccttgtttttacaaagaaaaatatgtattggcacgaaaatcaaagtaatagag 55609151  T
Q  244 agaga 248  Q
    |||||    
T  55609152 agaga 55609156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 152 - 246
Target Start/End: Complemental strand, 48649694 - 48649600
Alignment:
Q  152 ttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagaga 246  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||| |||||||||  |||||||||||||||||| |||||    
T  48649694 ttatttgaacatcaatttgtttgacaactaaatagacaaccacattttaacaaagaaaagtatgtattgaaacaaatatcaaagtaatagagaga 48649600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 145 - 248
Target Start/End: Complemental strand, 193715 - 193612
Alignment:
Q  145 agtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatataga 244  Q
    |||||||||||||||||||| |||||||||||||| |||| ||||| ||  ||||||||||||||||||||||||| ||| || |||||||||||| |||    
T  193715 agtagtgttatttgaacatctatttgcttgacaaccaaatagacaatcatgtttttacaaagaaaaatatgtattgacacgaaaatcaaagtaatagaga 193616  T
Q  245 gaga 248  Q
    ||||    
T  193615 gaga 193612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 144 - 248
Target Start/End: Original strand, 44257618 - 44257721
Alignment:
Q  144 gagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatag 243  Q
    ||||||||| ||||||||||||||||| ||||||||||||| ||||| |||||||||| |||||||| ||||||||  ||||||||||||| ||||| ||    
T  44257618 gagtagtgt-atttgaacatcaatttgtttgacaactaaatggacaatcacatttttataaagaaaagtatgtattaacacaaatatcaaaataatagag 44257716  T
Q  244 agaga 248  Q
    |||||    
T  44257717 agaga 44257721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 248
Target Start/End: Original strand, 36123347 - 36123451
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatata 242  Q
    |||||||||||||||||||||| |||||||||||||  |||| ||||| ||  ||||||||||||||| |||| ||| ||||||| |||||||||||| |    
T  36123347 agagtagtgttatttgaacatctatttgcttgacaatcaaatagacaa-catgtttttacaaagaaaagtatgcatttgcacaaaaatcaaagtaataga 36123445  T
Q  243 gagaga 248  Q
    ||||||    
T  36123446 gagaga 36123451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 19165319 - 19165403
Alignment:
Q  144 gagtagtgttatttgaacatcaatttgcttgacaacta-aattgacaaccacatttttacaaagaaaaatatgtattggcacaaa 227  Q
    |||| |||||||||||||||||||||| ||||||| |  ||| |||||||| |||||||||||||||||||||||||||||||||    
T  19165319 gagttgtgttatttgaacatcaatttgtttgacaaatctaatggacaaccatatttttacaaagaaaaatatgtattggcacaaa 19165403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 16019654 - 16019556
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    ||||||||||||||||||||| |||||||  | ||||||||||| ||||||| |||||||||||||  ||| |||||| ||||||| |||| |||||||    
T  16019654 tgttatttgaacatcaatttgattgacaagcatattgacaaccatatttttataaagaaaaatatgcgttgacacaaaaatcaaagcaatagagagaga 16019556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 246
Target Start/End: Complemental strand, 47015183 - 47015087
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagaga 246  Q
    |||||||||||||||| |||| |||||||| | |||||||| || |||||||||||||||| ||| |||||||||||| | ||||| |||| |||||    
T  47015183 tgttatttgaacatcagtttggttgacaaccacattgacaatcatatttttacaaagaaaagtatctattggcacaaaaaccaaagcaatagagaga 47015087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 32224110 - 32224014
Alignment:
Q  148 agtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagag 245  Q
    ||||||||| ||||||| ||||||||||||||||||| || |||||  ||||||||||| |||||||| ||||||||||| || ||| ||||| ||||    
T  32224110 agtgttattcgaacatctatttgcttgacaactaaatagataaccatgtttttacaaag-aaaatatgcattggcacaaaaattaaaataatagagag 32224014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 46665097 - 46665186
Alignment:
Q  159 aacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    |||||||| ||| |||||||| ||||||||||||| || ||||||||||||| |||||||||||| ||| ||||||| || | |||||||    
T  46665097 aacatcaacttgattgacaaccaaattgacaaccatatatttacaaagaaaagtatgtattggcataaaaatcaaagcaaaagagagaga 46665186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 246
Target Start/End: Complemental strand, 15522532 - 15522436
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagaga 246  Q
    |||||||||||||||||| || |||||||| | || ||||||||  |||||||||||||||  |||||||| ||| || | ||||| ||||||||||    
T  15522532 tgttatttgaacatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaatcatgtattgacacgaaaaccaaagcaatatagaga 15522436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 34363735 - 34363655
Alignment:
Q  144 gagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcac 224  Q
    |||| |||||||||||||||  ||||| |||||| || ||  |||||||||||| |||||||||||| |||||||||||||    
T  34363735 gagttgtgttatttgaacatttatttgtttgacagcttaacagacaaccacattattacaaagaaaagtatgtattggcac 34363655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 34757802 - 34757886
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaa 234  Q
    |||||||| || ||||||||| |||||||  | | |||||| || ||||||||||||||||| |||| |||||||||| ||||||    
T  34757802 tgttatttaaatatcaatttgattgacaatcacactgacaatcatatttttacaaagaaaaacatgtgttggcacaaaaatcaaa 34757886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 34759076 - 34759160
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaa 234  Q
    |||||||| || ||||||||| |||||||  | | |||||| || ||||||||||||||||| |||| |||||||||| ||||||    
T  34759076 tgttatttaaatatcaatttgattgacaatcacactgacaatcatatttttacaaagaaaaacatgtgttggcacaaaaatcaaa 34759160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 39478579 - 39478508
Alignment:
Q  185 tgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagagataaagtaa 256  Q
    ||||||||| | ||||||||||||||  | |||||| |||||| |||||||||||||||||| | |||||||    
T  39478579 tgacaaccaaaattttacaaagaaaatgaggtattgacacaaaaatcaaagtaatatagagaaagaaagtaa 39478508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 248
Target Start/End: Original strand, 50831641 - 50831747
Alignment:
Q  142 tagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatat 241  Q
    |||||| |||||||||||||| | ||||| |||||||||     |||||||| | ||||||||||||||| | || ||| |||||| ||||||| ||||     
T  50831641 tagagttgtgttatttgaacaaccatttgattgacaacttttgggacaaccataattttacaaagaaaaagaggtcttgacacaaaaatcaaagcaatag 50831740  T
Q  242 agagaga 248  Q
    |||||||    
T  50831741 agagaga 50831747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 624198 - 624266
Alignment:
Q  143 agagtagtgttatttgaacatc-aatttgcttgacaactaaattgacaaccacatttttacaaagaaaaa 211  Q
    |||| ||||||||||||||| | |||||| | ||||||| | |||||||||| |||||||||||||||||    
T  624198 agagaagtgttatttgaacaactaatttggt-gacaacttatttgacaaccatatttttacaaagaaaaa 624266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 10474041 - 10474102
Alignment:
Q  185 tgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagaga 246  Q
    ||||||||| |  |||||||||||||| | |||||| |||||| |||||||||||| |||||    
T  10474041 tgacaaccataaatttacaaagaaaaagaagtattgacacaaaaatcaaagtaatagagaga 10474102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 256
Target Start/End: Original strand, 9118751 - 9118862
Alignment:
Q  143 agagtagtgttatttgaacatc-aatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatg-tattggcacaaatatcaaagtaata 240  Q
    |||| ||||||||||||||| | |||||| | ||||||| | |||||||||| ||||| ||||||||||| ||| ||||||||| || |||| || ||||    
T  9118751 agaggagtgttatttgaacaaccaatttggt-gacaacttatttgacaaccatatttt-acaaagaaaaaaatggtattggcacgaaaatcatagcaata 9118848  T
Q  241 tagagagataaagtaa 256  Q
      ||||||||||||||    
T  9118849 --gagagataaagtaa 9118862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 12138983 - 12138926
Alignment:
Q  198 tttacaaagaaaaa-tatgtattggcacaaatatcaaagtaatatagagagataaagtaa 256  Q
    |||||||||||||| || ||||| ||||||| |||||||||  |||||||||||||||||    
T  12138983 tttacaaagaaaaagtaggtatttgcacaaaaatcaaagta--atagagagataaagtaa 12138926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 31574855 - 31574931
Alignment:
Q  172 ttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    |||||||| | || ||||||||  |||||||||||||||  ||||||||  ||||| ||||||| |||| |||||||    
T  31574855 ttgacaaccacatggacaaccatctttttacaaagaaaatcatgtattgatacaaaaatcaaagcaatagagagaga 31574931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 42491257 - 42491161
Alignment:
Q  144 gagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    |||| |||||||||||||| | ||||| |||||||||     |||||||| | ||| ||||||||||| | ||||||||||||| | ||||| ||||    
T  42491257 gagttgtgttatttgaacaaccatttgattgacaacttttgggacaaccataatttcacaaagaaaaagaggtattggcacaaaaaccaaagcaata 42491161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 45420320 - 45420223
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    |||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45420320 agagtagtgttatttgaacatcaatttatttgacaactaaatagacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 45420223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 142 - 248
Target Start/End: Complemental strand, 3771557 - 3771451
Alignment:
Q  142 tagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatat 241  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| |||||||||||||||||||     
T  3771557 tagagtagtgttatttgaacgtcaatttgcttgacaactaaatggacaaccacatttttacaaagaaaagtacgtattgacacaaatatcaaagtaatag 3771458  T
Q  242 agagaga 248  Q
    |||||||    
T  3771457 agagaga 3771451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 143 - 256
Target Start/End: Original strand, 12784283 - 12784396
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatata 242  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||  |||||||||||||||||||| ||||||| ||| |||||||||||| |    
T  12784283 agagtagtgttatttgaacatctatttgcttgacaactaaatagacaaccatgtttttacaaagaaaaatatgcattggcataaaaatcaaagtaataga 12784382  T
Q  243 gagagataaagtaa 256  Q
    |||||| |||||||    
T  12784383 gagagagaaagtaa 12784396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 4657482 - 4657381
Alignment:
Q  147 tagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagaga 246  Q
    |||| |||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| | |||||||||| |||||||||||||||| |||||    
T  4657482 tagtattatttgaacatcaatttgcttgacaaccaaatggacaatcacatttttacaaagaaaattgtgtattggcataaatatcaaagtaatagagaga 4657383  T
Q  247 ga 248  Q
    ||    
T  4657382 ga 4657381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 17999564 - 17999667
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatata 242  Q
    |||||||||||||||||||||| ||||| ||||||||||||| |||||||   ||||||||||||||||||||||||||||| || |||||||||||| |    
T  17999564 agagtagtgttatttgaacatctatttgtttgacaactaaatagacaaccttgtttttacaaagaaaaatatgtattggcacgaaaatcaaagtaataga 17999663  T
Q  243 gaga 246  Q
    ||||    
T  17999664 gaga 17999667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 1040697 - 1040601
Alignment:
Q  144 gagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    ||||||||||||||||||||| |||||||||||||  |||| ||||| ||| ||||||||||||||| |||||||||||||||| ||||||||||||    
T  1040697 gagtagtgttatttgaacatctatttgcttgacaatcaaatagacaatcacgtttttacaaagaaaagtatgtattggcacaaaaatcaaagtaata 1040601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 248
Target Start/End: Complemental strand, 29449395 - 29449291
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatata 242  Q
    |||||||||||||||||||||| |||||||||||||| |||| ||||| ||  ||||||||||||||| |||| ||| ||||||| |||||||||||| |    
T  29449395 agagtagtgttatttgaacatctatttgcttgacaaccaaatagacaa-catgtttttacaaagaaaagtatgcatttgcacaaaaatcaaagtaataga 29449297  T
Q  243 gagaga 248  Q
    ||||||    
T  29449296 gagaga 29449291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 256
Target Start/End: Original strand, 42532632 - 42532736
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagagat 249  Q
    ||||||||||||||| |||||||||||||| |||| ||| || |  |||||| |||||||||||||||||||||| || |||||||||  ||||||||||    
T  42532632 tgttatttgaacatctatttgcttgacaaccaaatagactactatgtttttataaagaaaaatatgtattggcacgaaaatcaaagta--atagagagat 42532729  T
Q  250 aaagtaa 256  Q
    |||||||    
T  42532730 aaagtaa 42532736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 256
Target Start/End: Complemental strand, 40700380 - 40700269
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatata 242  Q
    |||||||||||||||||||||| |||||||||||||| |||| ||||| ||  |||||| ||| |||||||| ||||| ||| || |||||||||  |||    
T  40700380 agagtagtgttatttgaacatctatttgcttgacaaccaaatagacaatcatgtttttataaaaaaaaatatatattgacacgaaaatcaaagta--ata 40700283  T
Q  243 gagagataaagtaa 256  Q
    ||||||||||||||    
T  40700282 gagagataaagtaa 40700269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 21738511 - 21738588
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaa 227  Q
    ||||||||||||||||||||| |||||||| | |||||||| || |||||||||||||||||||||| ||||||||||    
T  21738511 tgttatttgaacatcaatttggttgacaacgacattgacaatcatatttttacaaagaaaaatatgtgttggcacaaa 21738588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 7084608 - 7084698
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    ||||||||||||||||||||| |||||||| | |||||||| || |||||||||||||||| ||||| |||| ||||| ||||||| ||||    
T  7084608 tgttatttgaacatcaatttggttgacaaccacattgacaatcatatttttacaaagaaaagtatgtgttggtacaaaaatcaaagcaata 7084698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 19843662 - 19843564
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    ||||||||||||||||||||| |||||||  | ||||||||  | |||||||||||||||| ||||| |||||||||| ||||||| |||| |||||||    
T  19843662 tgttatttgaacatcaatttggttgacaatcatattgacaattatatttttacaaagaaaagtatgtgttggcacaaaaatcaaagcaatagagagaga 19843564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 26290744 - 26290832
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaa 238  Q
    ||||||||||||||||||||| |||| ||||| |||||||| || |||||||||||||||||||||| |||  ||||| | ||||||||    
T  26290744 tgttatttgaacatcaatttggttgataactacattgacaatcatatttttacaaagaaaaatatgtgttgttacaaaaaccaaagtaa 26290832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 43658605 - 43658688
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaa 233  Q
    |||||||||||||| |||||| |||||||| | ||||||||| |  ||||||||||||||| |||||||| ||||||| |||||    
T  43658605 tgttatttgaacattaatttggttgacaaccatattgacaactatttttttacaaagaaaagtatgtattagcacaaaaatcaa 43658688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 256
Target Start/End: Complemental strand, 33616611 - 33616539
Alignment:
Q  184 ttgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagagataaagtaa 256  Q
    |||||||||| |||||||||||||||| ||||| |||| ||||| ||||||| |||| ||||||| |||||||    
T  33616611 ttgacaaccatatttttacaaagaaaagtatgtgttggtacaaaaatcaaagcaatagagagagagaaagtaa 33616539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 4319892 - 4319809
Alignment:
Q  142 tagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcaca 225  Q
    ||||||||||||||||||||||| |||| |||||||| ||||| ||||  ||  |||||| |||||||| ||||||||| ||||    
T  4319892 tagagtagtgttatttgaacatctatttacttgacaattaaatagacagtcatgtttttataaagaaaattatgtattgacaca 4319809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 12071025 - 12070935
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    |||||||||||||||||| || |||||||| | || ||||||||  |||||||||||||||  |||||||| ||| || ||||||| ||||    
T  12071025 tgttatttgaacatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaatcatgtattgacacgaaaatcaaagcaata 12070935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 254
Target Start/End: Complemental strand, 5032102 - 5031998
Alignment:
Q  149 gtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaa-tatgtattggcacaaatatcaaagtaatatagagag 247  Q
    |||||||||||||| |  |||| | ||||||| | |||||||||| |  |||||||||||||| || || || |||||||||||||||||  ||||||||    
T  5032102 gtgttatttgaacaaccttttgatagacaacttatttgacaaccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagta--atagagag 5032005  T
Q  248 ataaagt 254  Q
    |||||||    
T  5032004 ataaagt 5031998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 40357973 - 40358049
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtatt 219  Q
    |||||||| ||||||  ||||||||||  |||||||  |||| ||||| || |||||||||||||||| ||||||||    
T  40357973 agagtagtattatttacacatcaatttatttgacaatcaaatagacaatcatatttttacaaagaaaattatgtatt 40358049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 6336394 - 6336351
Alignment:
Q  184 ttgacaaccacatttttacaaagaaaaatatgtattggcacaaa 227  Q
    |||||||||| |||||||||||||||| ||||| ||||||||||    
T  6336394 ttgacaaccatatttttacaaagaaaagtatgtgttggcacaaa 6336351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 18737800 - 18737851
Alignment:
Q  183 attgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaa 234  Q
    ||||||||||| ||||||| |||||||| ||||| |||||||||| ||||||    
T  18737800 attgacaaccatatttttataaagaaaagtatgtgttggcacaaaaatcaaa 18737851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 45259216 - 45259279
Alignment:
Q  184 ttgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagag 247  Q
    ||||||| || |||||||||||||||| ||||| |||| ||||| ||||||| |||| ||||||    
T  45259216 ttgacaaacatatttttacaaagaaaagtatgtgttggtacaaaaatcaaagcaatagagagag 45259279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 248
Target Start/End: Original strand, 27490616 - 27490722
Alignment:
Q  142 tagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatat 241  Q
    |||||| |||||||||||||||| ||||   ||||||||    |||||| || | ||||||||||||||  |||||||  |||||| ||||||| ||||     
T  27490616 tagagttgtgttatttgaacatccattttgatgacaacttttgtgacaatcaaaattttacaaagaaaatgatgtattaacacaaaaatcaaagcaatag 27490715  T
Q  242 agagaga 248  Q
    |||||||    
T  27490716 agagaga 27490722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 248
Target Start/End: Complemental strand, 14328566 - 14328461
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatata 242  Q
    |||| |||||||||||||||||| | || |||||||| | || |||||  | |||||||| |||||||  |||||||| ||| || ||||||| || | |    
T  14328566 agagcagtgttatttgaacatcattgtgattgacaaccacatggacaattatatttttactaagaaaatcatgtattgacacgaaaatcaaagcaacaga 14328467  T
Q  243 gagaga 248  Q
    ||||||    
T  14328466 gagaga 14328461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 18982996 - 18982951
Alignment:
Q  172 ttgacaactaaattgacaaccacatttttacaaagaaaaatatgta 217  Q
    |||||||| |||| |||||||| |||||||||||||||| ||||||    
T  18982996 ttgacaaccaaatggacaaccatatttttacaaagaaaagtatgta 18982951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 40599208 - 40599270
Alignment:
Q  184 ttgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    ||||||| || ||||||||||| |||||||||  |||||||||| | ||||| ||||||||||||    
T  40599208 ttgacaatcatatttttacaaaaaaaaatatg--ttggcacaaaaaccaaagcaatatagagaga 40599270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 39309586 - 39309518
Alignment:
Q  151 gttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtatt 219  Q
    |||||||||| ||||||||| |||||||  | ||||| || || |||||||||||||||| ||| ||||    
T  39309586 gttatttgaaaatcaatttggttgacaatcatattgataatcatatttttacaaagaaaagtatatatt 39309518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 144 - 248
Target Start/End: Complemental strand, 12681 - 12577
Alignment:
Q  144 gagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatag 243  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||    
T  12681 gagtagagttatttgaacatcaatttgcttgacaactaaatggacaaccacatttttaccaagaaaagtatgtattggcacaaatatcaaagtaatagag 12582  T
Q  244 agaga 248  Q
    |||||    
T  12581 agaga 12577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 144 - 248
Target Start/End: Complemental strand, 22098439 - 22098335
Alignment:
Q  144 gagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatag 243  Q
    |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  22098439 gagtagtgttatttgaacatcaatttgcttgataattaaatggacaaccacatttttacaaagaaaagtatgtattggcacaaatatcaaagtaatagag 22098340  T
Q  244 agaga 248  Q
    |||||    
T  22098339 agaga 22098335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 246
Target Start/End: Complemental strand, 32639226 - 32639125
Alignment:
Q  145 agtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatataga 244  Q
    |||||||||||||||||||| |||||| ||||||  |||| ||||| |  |||||||||||||||| |||||||| |||| || ||||||||||||||||    
T  32639226 agtagtgttatttgaacatctatttgcatgacaatcaaatagacaatcttatttttacaaagaaaagtatgtattagcacgaaaatcaaagtaatataga 32639127  T
Q  245 ga 246  Q
    ||    
T  32639126 ga 32639125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 16690686 - 16690587
Alignment:
Q  141 ctagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    |||||| | ||||||||||| ||||||||| |||||||| | ||||||||||| |||||||||||||||| ||||| |||||||||| | ||||| ||||    
T  16690686 ctagagcaatgttatttgaatatcaatttggttgacaaccacattgacaaccatatttttacaaagaaaagtatgtgttggcacaaaaaccaaagcaata 16690587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 248
Target Start/End: Original strand, 38293245 - 38293350
Alignment:
Q  144 gagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaa--atatgtattggcacaaatatcaaagtaatat 241  Q
    ||||||||||||||||||||| |||||||||||||| |||| ||||| ||  |||||||||||||||  ||||  ||||||||||| ||||||||||||     
T  38293245 gagtagtgttatttgaacatctatttgcttgacaaccaaatagacaatcatgtttttacaaagaaaagtatatacattggcacaaa-atcaaagtaatag 38293343  T
Q  242 agagaga 248  Q
    |||||||    
T  38293344 agagaga 38293350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 27947368 - 27947316
Alignment:
Q  12 tgagatgaaatgataatgcaaagacgagaatttcaaaaacaaacggcatgtat 64  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27947368 tgagatgaaatgataatgcgaagacgagaatttcaaaaacaaacggcatgtat 27947316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 38493803 - 38493698
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcac-aaatatcaaagtaatatagagaga 248  Q
    ||||||||||||||||||||| |||||||| | ||||||| ||| ||||| |||||||||| ||||| ||||||| ||| ||||||| |  |||||||||    
T  38493803 tgttatttgaacatcaatttggttgacaaccacattgacacccatattttaacaaagaaaagtatgtgttggcacaaaaaatcaaagca--atagagaga 38493706  T
Q  249 taaagtaa 256  Q
    ||||||||    
T  38493705 taaagtaa 38493698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 40364749 - 40364648
Alignment:
Q  147 tagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagaga 246  Q
    |||||||||||||||||| |||||||||||||  |||| || |||||  |||||| |||||||| |||  || |||||||| |||||||||||| |||||    
T  40364749 tagtgttatttgaacatctatttgcttgacaatcaaatagataaccatgtttttagaaagaaaagtatacatcggcacaaaaatcaaagtaatagagaga 40364650  T
Q  247 ga 248  Q
    ||    
T  40364649 ga 40364648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 246
Target Start/End: Original strand, 9168061 - 9168156
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagaga 246  Q
    ||||||||||||||||||||| |||||||| | |||||||| || | |||||||||||||| ||||| |||||||||| | ||||| |||| |||||    
T  9168061 tgttatttgaacatcaatttggttgacaaccatattgacaatcata-ttttacaaagaaaagtatgtgttggcacaaaaaccaaagcaatagagaga 9168156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 256
Target Start/End: Complemental strand, 40829598 - 40829488
Alignment:
Q  144 gagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatag 243  Q
    ||||| |||||||||||||| | ||||  ||||||| ||||||||||| | ||||| | |||||||| |||||||| |||| || || ||||||  ||||    
T  40829598 gagtaatgttatttgaacattactttgtgtgacaaccaaattgacaactaaattttcataaagaaaagtatgtattagcacgaaaattaaagta--atag 40829501  T
Q  244 agagataaagtaa 256  Q
    |||||||||||||    
T  40829500 agagataaagtaa 40829488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 884619 - 884535
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaa 234  Q
    ||||||||||||||||||||  |||||||  | ||| ||||||| |||||||||| ||||| ||||| |||||||||| ||||||    
T  884619 tgttatttgaacatcaatttagttgacaatcatattaacaaccatatttttacaatgaaaagtatgtgttggcacaaaaatcaaa 884535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 14321850 - 14321918
Alignment:
Q  152 ttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattg 220  Q
    ||||||||||||||||||  |||||||| | || |||||||| | |||||||||||||| |||||||||    
T  14321850 ttatttgaacatcaatttaattgacaaccatatggacaaccatacttttacaaagaaaattatgtattg 14321918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 26687047 - 26686996
Alignment:
Q  159 aacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaa 210  Q
    ||||| |||||| |||||||||| ||||||||||| ||||||||||||||||    
T  26687047 aacattaatttgattgacaactacattgacaaccatatttttacaaagaaaa 26686996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 26956778 - 26956727
Alignment:
Q  159 aacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaa 210  Q
    ||||| |||||| |||||||||| ||||||||||| ||||||||||||||||    
T  26956778 aacattaatttgattgacaactacattgacaaccatatttttacaaagaaaa 26956727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 34940809 - 34940751
Alignment:
Q  152 ttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaa 210  Q
    ||||||||||||||||||| |||||||| | |||||||| || ||||||| ||||||||    
T  34940809 ttatttgaacatcaatttggttgacaaccacattgacaatcatatttttataaagaaaa 34940751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 4088628 - 4088547
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcac 224  Q
    ||||| |||||||||||||||| ||||  ||||||||  |  |||||| || |||||||||||||||  |||||||| ||||    
T  4088628 agagttgtgttatttgaacatctatttttttgacaacctatgtgacaatcatatttttacaaagaaatgtatgtattagcac 4088547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 6940042 - 6940148
Alignment:
Q  149 gtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaa-gaaaaatatgtattggcacaaatatcaaagtaatatagagag 247  Q
    |||||||||||||| | ||||| | ||||||| | |||||||||| |  |||||||| ||||| || || ||||||| || ||||||| |  ||||||||    
T  6940042 gtgttatttgaacaaccatttgatagacaacttatttgacaaccataaatttacaaaggaaaagtaggttttggcacgaaaatcaaagca--atagagag 6940139  T
Q  248 ataaagtaa 256  Q
    |||||||||    
T  6940140 ataaagtaa 6940148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 41699586 - 41699533
Alignment:
Q  195 atttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    |||||||||||||||| ||||||||| ||| || |||||| ||||| |||||||    
T  41699586 atttttacaaagaaaattatgtattgacacgaaaatcaaattaatagagagaga 41699533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 35822868 - 35822966
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    ||||||||||||||||||||| |||||||| |  |||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| |||||||    
T  35822868 tgttatttgaacatcaatttggttgacaaccacgttgacaaccatatttttacaaagaaaaatatgtattggcacaaaaatcaaagcaatagagagaga 35822966  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 44496699 - 44496786
Alignment:
Q  153 tatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    |||||||||||||||||| ||||||| ||||| |||||||| |||||||||||||||| ||||||||||||||||||||||| |||||    
T  44496699 tatttgaacatcaatttgtttgacaattaaatggacaaccatatttttacaaagaaaattatgtattggcacaaatatcaaaataata 44496786  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 144 - 248
Target Start/End: Complemental strand, 31398308 - 31398204
Alignment:
Q  144 gagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatag 243  Q
    ||||||||||||||||||||  ||||| |||||||| |||| |||||||   ||||||||||||||||||||||||||||| || |||||||||||| ||    
T  31398308 gagtagtgttatttgaacatttatttgtttgacaaccaaatagacaaccttgtttttacaaagaaaaatatgtattggcacgaaaatcaaagtaatagag 31398209  T
Q  244 agaga 248  Q
    |||||    
T  31398208 agaga 31398204  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 41590415 - 41590503
Alignment:
Q  152 ttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    ||||||||||||| |||||||||||||| |||| ||||||||  ||||||||| |||||||||||||||||||||| ||||||||||||    
T  41590415 ttatttgaacatctatttgcttgacaaccaaatagacaaccatgtttttacaaggaaaaatatgtattggcacaaaaatcaaagtaata 41590503  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 248
Target Start/End: Complemental strand, 48145697 - 48145604
Alignment:
Q  143 agagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatata 242  Q
    |||||||||||||||||||||||||||||||||            |||||| |||||||||||||||| ||||||||||||||||||||||||||||| |    
T  48145697 agagtagtgttatttgaacatcaatttgcttga------------caaccatatttttacaaagaaaagtatgtattggcacaaatatcaaagtaataga 48145610  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 248
Target Start/End: Complemental strand, 26018226 - 26018120
Alignment:
Q  142 tagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatat 241  Q
    ||||||||| |||||||||| || ||||||||||||| ||||| ||||| || ||||||| |||||||| |||||||| | | ||| || |||||||||     
T  26018226 tagagtagttttatttgaacgtctatttgcttgacaattaaatagacaatcatatttttataaagaaaagtatgtatttgtataaaaattaaagtaatag 26018127  T
Q  242 agagaga 248  Q
    |||||||    
T  26018126 agagaga 26018120  T

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Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 42598135 - 42598197
Alignment:
Q  184 ttgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagaga 246  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||    
T  42598135 ttgacaaccacatttttataaagaaaattatgtattggcacaaatatctaagtaatagagaga 42598197  T

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Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 41589977 - 41590066
Alignment:
Q  148 agtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    ||||||||||||||||  ||||| |||||||| |||| ||||| || ||||||| || |||||||||||||||||||||| ||||||||||||    
T  41589977 agtgttatttgaacat--atttgtttgacaac-aaatagacaatcatatttttataaggaaaaatatgtattggcacaaaaatcaaagtaata 41590066  T

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Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 40854582 - 40854646
Alignment:
Q  184 ttgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    |||||||||| |||||||||||||||| ||||| |||||||||| ||||||| |||| |||||||    
T  40854582 ttgacaaccatatttttacaaagaaaagtatgtgttggcacaaaaatcaaagcaatagagagaga 40854646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 256
Target Start/End: Original strand, 36352477 - 36352582
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaa-ctaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    |||||||||||||||||| || ||||||| ||| || ||||||||  |||||||||||||||  || ||||| ||| || ||||||| |  |||||||||    
T  36352477 tgttatttgaacatcaatgtgattgacaaactacatggacaaccatctttttacaaagaaaatcatatattgacacgaaaatcaaagca--atagagaga 36352574  T
Q  249 taaagtaa 256  Q
    ||||||||    
T  36352575 taaagtaa 36352582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 256
Target Start/End: Original strand, 41430045 - 41430149
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagagat 249  Q
    |||||||||||||||||| || |||||||| | || ||||||||  |||||||||||||||  || ||||| ||| || | ||||| |  ||||||||||    
T  41430045 tgttatttgaacatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaatcatatattgacacgaaaaccaaagca--atagagagat 41430142  T
Q  250 aaagtaa 256  Q
    |||||||    
T  41430143 aaagtaa 41430149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 42584980 - 42584876
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagagat 249  Q
    |||||||||||||||||| || |||||||| | || ||||||||  |||||||||||||||  || ||||| ||| |  ||||||| |  ||||||||||    
T  42584980 tgttatttgaacatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaatcatctattgacacgagaatcaaagca--atagagagat 42584883  T
Q  250 aaagtaa 256  Q
    |||||||    
T  42584882 aaagtaa 42584876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 246
Target Start/End: Original strand, 44651126 - 44651220
Alignment:
Q  153 tatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaa-tatgtattggcacaaatatcaaagtaatatagaga 246  Q
    |||||||||||||||||  |||||||||| ||||| ||| | ||||||||||| ||||| ||||  |||| ||||| || ||||||||| |||||    
T  44651126 tatttgaacatcaatttcattgacaactatattgataactatatttttacaaaaaaaaagtatgcgttggtacaaaaattaaagtaatagagaga 44651220  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 46259979 - 46260075
Alignment:
Q  142 tagagtagtgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaata 240  Q
    |||||||||||||||| || ||| ||  |||||| ||  |||| || |||||  |||||||||||||||||||||||||| || || | ||||||||||    
T  46259979 tagagtagtgttatttcaagatctat--gcttgagaatcaaatagataaccatgtttttacaaagaaaaatatgtattggtacgaaaaccaaagtaata 46260075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 34507099 - 34507197
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    |||||||||||||||||| || |||||||| | || |||||| |  |||||| ||| ||||  |||||||| ||| || ||||||| |||| |||||||    
T  34507099 tgttatttgaacatcaatgtgattgacaaccacatggacaactatctttttataaaaaaaatcatgtattgacacgaaaatcaaagcaatagagagaga 34507197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 19562262 - 19562346
Alignment:
Q  172 ttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagagataaagtaa 256  Q
    ||||||||| ||  || ||||| |||||||||||||||| ||||||||  ||| ||  ||||||||||| | ||||| |||||||    
T  19562262 ttgacaacttaacggataaccatatttttacaaagaaaagtatgtatttacacgaaagtcaaagtaatagatagagagaaagtaa 19562346  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 256
Target Start/End: Complemental strand, 46829653 - 46829552
Alignment:
Q  154 atttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaa-tatgtattggcacaaatatcaaagtaatatagagagataaa 252  Q
    ||||||||| | ||||| | ||||||| | |||||||||| |  |||||||||||||| || || ||||||| || ||||||| |  |||||||||||||    
T  46829653 atttgaacaaccatttgatagacaacttatttgacaaccataaatttacaaagaaaaagtaggttttggcacgaaaatcaaagca--atagagagataaa 46829556  T
Q  253 gtaa 256  Q
    ||||    
T  46829555 gtaa 46829552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 47012495 - 47012547
Alignment:
Q  182 aattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaa 234  Q
    |||||||||||| |||||||||||||||| ||| | |||| ||||| ||||||    
T  47012495 aattgacaaccatatttttacaaagaaaagtatatgttggtacaaaaatcaaa 47012547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 248
Target Start/End: Complemental strand, 7247 - 7139
Alignment:
Q  145 agtagtgttatttgaacatcaatttgcttgacaa-------ctaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagta 237  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||  |||||||||| |||| |||| || |||||||||||||    
T  7247 agtagtgttatttgaacatcaatttgcttgacaaatgacaactaaattgacaaccacattt--acaaagaaaagtatgcattgacataaatatcaaagta 7150  T
Q  238 atatagagaga 248  Q
    ||| |||||||    
T  7149 atagagagaga 7139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 246
Target Start/End: Complemental strand, 1322 - 1226
Alignment:
Q  150 tgttatttgaacatcaatttgcttgacaactaaattgacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagaga 246  Q
    |||||||||||||||| |||| |||||||| | |||||||| || |||||||||||||||| ||| |||||||||||| | ||||| |||| |||||    
T  1322 tgttatttgaacatcagtttggttgacaaccacattgacaatcatatttttacaaagaaaagtatctattggcacaaaaaccaaagcaatagagaga 1226  T

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Target: scaffold0013 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 94811 - 94873
Alignment:
Q  186 gacaaccacatttttacaaagaaaaatatgtattggcacaaatatcaaagtaatatagagaga 248  Q
    |||||| | ||||||||||||||||||||||||| ||||||| |||||||||||| |||||||    
T  94811 gacaactatatttttacaaagaaaaatatgtattagcacaaaaatcaaagtaatagagagaga 94873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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