View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7994_high_16 (Length: 249)
Name: NF7994_high_16
Description: NF7994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7994_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 39 - 245
Target Start/End: Complemental strand, 15113584 - 15113378
Alignment:
| Q |
39 |
cattggcatagcttccagctttgtcatgaagtctgcacattggttcacctttctatggggcgactcataatgaa--tatagtatataaacaatgaatata |
136 |
Q |
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| T |
15113584 |
cattggcatagcttccagctttgtcatgaagtctgcacattggttcccctttctatggggcgactcataatgaatatatagtatataaacaatgaatata |
15113485 |
T |
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| Q |
137 |
ttatacaagaaacatcacaaattcttttctatggaatgaatacactatatagagttaattttgaatgagagatgcatataaaagcatattccaagtatca |
236 |
Q |
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| T |
15113484 |
ttatacaagaaacttcacaaattcttttctatggaatgaatacac--tatagagttaattttgaatgagagatgcatataaaagcatattccaagtatca |
15113387 |
T |
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| Q |
237 |
ggaacacca |
245 |
Q |
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| T |
15113386 |
ggaacacca |
15113378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 15113631 - 15113579
Alignment:
| Q |
29 |
gaaaaagtgccattggcatagcttccagctttgtcatgaagtctgcacattgg |
81 |
Q |
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| T |
15113631 |
gaaaaagtgccattggcatagcttccagctttgtcatgaagtctgcacattgg |
15113579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 18358860 - 18358896
Alignment:
| Q |
209 |
tgcatataaaagcatattccaagtatcaggaacacca |
245 |
Q |
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| T |
18358860 |
tgcatataaaagctgattccaagtatcaggaacacca |
18358896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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