View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7994_high_5 (Length: 494)

Name: NF7994_high_5
Description: NF7994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7994_high_5
NF7994_high_5
[»] chr1 (3 HSPs)
chr1 (19-223)||(4611952-4612156)
chr1 (371-474)||(4611700-4611803)
chr1 (86-152)||(4685349-4685415)
[»] chr7 (2 HSPs)
chr7 (87-156)||(41208845-41208914)
chr7 (86-152)||(2460470-2460536)
[»] chr4 (3 HSPs)
chr4 (86-151)||(40254617-40254682)
chr4 (87-152)||(21173502-21173567)
chr4 (87-163)||(53557002-53557078)
[»] chr2 (1 HSPs)
chr2 (87-152)||(40820170-40820235)
[»] chr5 (1 HSPs)
chr5 (86-164)||(5113167-5113245)


Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 4612156 - 4611952
Alignment:
Q  19 aaccatagcggtggcatctaagtttataacatcattgttcaacaattttttgttgagtaagagtagccatgggaagagctccttgttgtgacaaagaaaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4612156 aaccatagcggtggcatctaagtttataacatcattgttcaacaattttttgttgagtaagagtagtcatgggaagagctccttgttgtgacaaagaaaa 4612057  T
Q  119 ggttaagagaggaccatggtctcctgatgaagatgcaacactcaagagttatcttgcaactcatggcactgttggaaattggattgcattgcccaaaaaa 218  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4612056 agttaagagaggaccatggtctcctgatgaagatgcaacactcaagagttatcttgcaactcatggcactgttggaaattggattgcattgcccaaaaaa 4611957  T
Q  219 gctgg 223  Q
    |||||    
T  4611956 gctgg 4611952  T

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Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 371 - 474
Target Start/End: Complemental strand, 4611803 - 4611700
Alignment:
Q  371 gatatgtttttcttccgattgaaggattattgacatacatgaaaatgaaagaacttttttccccatagcaagtataaaaagaggaaatttcattcaactt 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4611803 gatatgtttttcttccgattgaaggattattgacatacatgaaaatgaaagaacttttttccccttagcaagtataaaaagaggaaatttcattcaactt 4611704  T
Q  471 tgtc 474  Q
    ||||    
T  4611703 tgtc 4611700  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 4685349 - 4685415
Alignment:
Q  86 catgggaagagctccttgttgtgacaaagaaaaggttaagagaggaccatggtctcctgatgaagat 152  Q
    |||||| |||||||||||||||||||||| ||| || |||| ||| ||||||||||| || ||||||    
T  4685349 catgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagat 4685415  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 41208914 - 41208845
Alignment:
Q  87 atgggaagagctccttgttgtgacaaagaaaaggttaagagaggaccatggtctcctgatgaagatgcaa 156  Q
    ||||||||| ||||||| ||||||||||  || || |||| ||| |||||||||||||| ||||||||||    
T  41208914 atgggaagatctccttgctgtgacaaagctaatgtaaagaaaggtccatggtctcctgaagaagatgcaa 41208845  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 2460470 - 2460536
Alignment:
Q  86 catgggaagagctccttgttgtgacaaagaaaaggttaagagaggaccatggtctcctgatgaagat 152  Q
    |||||||||| | ||||||||||||||||||   ||||| | |||||||||| ||||||| ||||||    
T  2460470 catgggaagaccaccttgttgtgacaaagaaggtgttaaaaaaggaccatggactcctgaagaagat 2460536  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 40254682 - 40254617
Alignment:
Q  86 catgggaagagctccttgttgtgacaaagaaaaggttaagagaggaccatggtctcctgatgaaga 151  Q
    |||||| ||||||||||||||||||||||  || || |||||||| |||||||| ||||| |||||    
T  40254682 catggggagagctccttgttgtgacaaagccaatgtcaagagaggtccatggtcacctgaagaaga 40254617  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 21173502 - 21173567
Alignment:
Q  87 atgggaagagctccttgttgtgacaaagaaaaggttaagagaggaccatggtctcctgatgaagat 152  Q
    |||||||||||||| ||||||||||||  ||  ||||||||||| |||||||| || || ||||||    
T  21173502 atgggaagagctccatgttgtgacaaaacaagtgttaagagaggtccatggtcaccagaagaagat 21173567  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 53557002 - 53557078
Alignment:
Q  87 atgggaagagctccttgttgtgacaaagaaaaggttaagagaggaccatggtctcctgatgaagatgcaacactcaa 163  Q
    ||||| |||||||| || |||||||| |  || || |||| |||||| ||||||||||| |||||||| ||||||||    
T  53557002 atgggtagagctccatgctgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatgctacactcaa 53557078  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 40820235 - 40820170
Alignment:
Q  87 atgggaagagctccttgttgtgacaaagaaaaggttaagagaggaccatggtctcctgatgaagat 152  Q
    ||||||||||||||||| |||||||||| ||| || |||| |||||||||||| || || ||||||    
T  40820235 atgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccatggtcaccagaagaagat 40820170  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 164
Target Start/End: Original strand, 5113167 - 5113245
Alignment:
Q  86 catgggaagagctccttgttgtgacaaagaaaaggttaagagaggaccatggtctcctgatgaagatgcaacactcaag 164  Q
    |||||||||||||||||| ||||||||||  || || || | ||| |||||||| ||||| |||||||| | |||||||    
T  5113167 catgggaagagctccttgctgtgacaaagccaatgtcaaaaaaggtccatggtcacctgaagaagatgctaaactcaag 5113245  T

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