View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7994_high_6 (Length: 468)
Name: NF7994_high_6
Description: NF7994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7994_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 20 - 454
Target Start/End: Complemental strand, 9629859 - 9629429
Alignment:
| Q |
20 |
gtctcgtccaagaagtgtccgtgcttacacagtagtgaagtacattactactgactgtatagtataataactaatcaatgacatgcagtacacaaagcat |
119 |
Q |
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| T |
9629859 |
gtctcgtccaagaagtgtccgtgcttacacagtagtgaagtacattactactg----tatagtataataactaatcaatgacatgcagtacacaaagcat |
9629764 |
T |
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| Q |
120 |
cttttctctactgatcatttctgaaacaccagggatgtatatcataacatcattctggcattgtatgtatttggtgaaaaaatcaatgtatggtccaata |
219 |
Q |
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| T |
9629763 |
cttttctctactgatcatttctgaaacaccagggatgtatatcataacatcattctggcattgtatgtatttggtgaaaaaatgaatgtatggtccaata |
9629664 |
T |
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| Q |
220 |
ttgtttatttaattcatagcagctaatgattgagtatgcatgtatcatgtgtgttaatgttatttatgttttcaatttcggtccattaataattaattat |
319 |
Q |
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| T |
9629663 |
ttgtttatttaattcatagcagctaatgattgagtatgcatgtatcatgtgtgttaatgttatttatgttttcaattttggtccattaataattaattat |
9629564 |
T |
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| Q |
320 |
attttcttaaaatttctcttatgtagattggaattgaatgccaactcagtgctgaagaacttgctcaacaaatccagcaaacattttattaagataggtt |
419 |
Q |
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| T |
9629563 |
attttcttaaaatttctcttatgtagattggaattgaatgccaactcagtgctgaagaacttgctcaacaaatccagcaaacattttattaagaaaggtt |
9629464 |
T |
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| Q |
420 |
attaccatctagagacaagatcaagaatcagtgaa |
454 |
Q |
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| T |
9629463 |
attaccatctagagacaagatcaagaatcaatgaa |
9629429 |
T |
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Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 338 - 404
Target Start/End: Original strand, 41258571 - 41258637
Alignment:
| Q |
338 |
ttatgtagattggaattgaatgccaactcagtgctgaagaacttgctcaacaaatccagcaaacatt |
404 |
Q |
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| T |
41258571 |
ttatatagattggaattgaatgccaactgagtgctgaagaacttgctcaacaaatccagcaaacatt |
41258637 |
T |
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