View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7994_low_10 (Length: 355)

Name: NF7994_low_10
Description: NF7994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7994_low_10
NF7994_low_10
[»] chr7 (2 HSPs)
chr7 (18-344)||(1322649-1322976)
chr7 (118-165)||(10289260-10289307)
[»] chr5 (1 HSPs)
chr5 (184-335)||(28201412-28201566)
[»] chr8 (2 HSPs)
chr8 (226-329)||(26161922-26162027)
chr8 (18-72)||(26161695-26161749)
[»] chr1 (2 HSPs)
chr1 (226-322)||(36386566-36386663)
chr1 (118-165)||(43407836-43407883)
[»] chr3 (3 HSPs)
chr3 (18-114)||(27758851-27758947)
chr3 (114-183)||(27758964-27759034)
chr3 (118-165)||(7337163-7337210)
[»] scaffold0054 (2 HSPs)
scaffold0054 (248-317)||(31681-31751)
scaffold0054 (18-70)||(31247-31299)


Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 1322976 - 1322649
Alignment:
Q  18 gtaactaattgttaggtgttataatttaaagagtatgattcataactgttgttaagaagaaataaaagtaaaacacaactttaagtggtaaaatttatga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  1322976 gtaactaattgttaggtgttataatttaaagagtatgattcataactgttgttaagaagaaatgaaagtaaaacacaactttatgtggtaaaatttatga 1322877  T
Q  118 ttttaattatgttttatatgatatttgtgcatgaggatgtgatgtgaatgatatatgtgaagaaacatgtgttgtgat-tttgagaaataaatgttagat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1322876 ttttaattatgttttatatgatatttgtgcatgaggatgtgatgtgaatgatatatgtgaagaaacatgtgttgtgatgtttgagaaataaatgttagat 1322777  T
Q  217 tttgatatattaaagaaagaaagaaaataatggaaaaatgagttttatgaaaagattggttttgggtcatgtgcatgatgattattaatagttgattgtg 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1322776 tttgatatattaaagaaagaaagaaaataatggaaaaatgagttttatgaaaagattggttttgggtcatgtgcatgatgattattaataattgattgtg 1322677  T
Q  317 tttgccttagtggttggataggattcat 344  Q
    ||||  ||||||||||||| | ||||||    
T  1322676 tttgttttagtggttggattgcattcat 1322649  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 10289307 - 10289260
Alignment:
Q  118 ttttaattatgttttatatgatatttgtgcatgaggatgtgatgtgaa 165  Q
    ||||||||||||||||||||| | ||||| ||| ||||||||||||||    
T  10289307 ttttaattatgttttatatgaaagttgtgtatgtggatgtgatgtgaa 10289260  T

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Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 184 - 335
Target Start/End: Original strand, 28201412 - 28201566
Alignment:
Q  184 atgtgttgtgat-tttgagaaataaatgttagatttt-gatatattaaagaaagaaagaaaataatggaaaaatgagttttatgaaaagattggtttt-g 280  Q
    |||||||||||| ||||||||| |||||||||||||| |||  || ||||||||||||||||||||| |||   |||||||||||||||||||||||| |    
T  28201412 atgtgttgtgatgtttgagaaagaaatgttagatttttgatgaatcaaagaaagaaagaaaataatgaaaatgcgagttttatgaaaagattggtttttg 28201511  T
Q  281 ggtcatgtgcatgatgattattaatagttgattgtgtttgccttagtggttggat 335  Q
    ||||||||||||||||| |||||||| |||||||||||||||| |||||| ||||    
T  28201512 ggtcatgtgcatgatgaatattaatatttgattgtgtttgcctaagtggtgggat 28201566  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 226 - 329
Target Start/End: Original strand, 26161922 - 26162027
Alignment:
Q  226 ttaaagaaagaaagaaaataatggaaaaatgagttttatgaaaagattgg-ttttgggtcatgtgc-atgatgattattaatagttgattgtgtttgcct 323  Q
    ||||||||||||||||||| | |||||  ||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| ||||||||||||||||    
T  26161922 ttaaagaaagaaagaaaatcaaggaaatgtgagttttatgaaaagattggtttttgggtcatgtgcaatgatggttattaatatttgattgtgtttgcct 26162021  T
Q  324 tagtgg 329  Q
     |||||    
T  26162022 aagtgg 26162027  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 26161695 - 26161749
Alignment:
Q  18 gtaactaattgttaggtgttataatttaaagagtatgattcataactgttgttaa 72  Q
    ||||||||| ||||||| |||| |||||||||||||| ||||||| |||||||||    
T  26161695 gtaactaatggttaggtattatgatttaaagagtatggttcataattgttgttaa 26161749  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 226 - 322
Target Start/End: Complemental strand, 36386663 - 36386566
Alignment:
Q  226 ttaaagaaagaaagaaaataatggaaaaatgagttttatgaaaagattggtttt-gggtcatgtgcatgatgattattaatagttgattgtgtttgcc 322  Q
    |||||| |||||||||||| | |||||  |||||||||||||||||||| |||| ||||||||||||||||| ||||||||| |||||||||||||||    
T  36386663 ttaaaggaagaaagaaaatcaaggaaatgtgagttttatgaaaagattgatttttgggtcatgtgcatgatggttattaatatttgattgtgtttgcc 36386566  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 43407883 - 43407836
Alignment:
Q  118 ttttaattatgttttatatgatatttgtgcatgaggatgtgatgtgaa 165  Q
    ||||||||||||||||||||| | ||||| ||| ||||||||||||||    
T  43407883 ttttaattatgttttatatgaaagttgtgtatgtggatgtgatgtgaa 43407836  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 27758851 - 27758947
Alignment:
Q  18 gtaactaattgttaggtgttataatttaaagagtatgattcataactgttgttaagaagaaataaaagtaaaacacaactttaagtggtaaaattta 114  Q
    ||||||||| ||||||| |||||||||||||||||  |||||||| ||||| |||  |||||||||| ||||| ||||| |||||||||||||||||    
T  27758851 gtaactaatggttaggtattataatttaaagagtacaattcataattgttgataaagagaaataaaattaaaatacaaccttaagtggtaaaattta 27758947  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 27758964 - 27759034
Alignment:
Q  114 atgattttaattatgttttatatgatatttgtgcatgaggatgtgatgt-gaatgatatatgtgaagaaac 183  Q
    ||||||||||||||||   | |||||||||||| |||| |||||||||| ||||||||||| |||||||||    
T  27758964 atgattttaattatgtccaacatgatatttgtgtatgaagatgtgatgtggaatgatatatatgaagaaac 27759034  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 7337210 - 7337163
Alignment:
Q  118 ttttaattatgttttatatgatatttgtgcatgaggatgtgatgtgaa 165  Q
    ||||||||||||||||||||| | ||||| ||| ||||||||||||||    
T  7337210 ttttaattatgttttatatgaaagttgtgtatgtggatgtgatgtgaa 7337163  T

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Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 317
Target Start/End: Original strand, 31681 - 31751
Alignment:
Q  248 ggaaaaatgagttttatgaaaagattggtttt-gggtcatgtgcatgatgattattaatagttgattgtgt 317  Q
    ||||| ||||||||||||||||||||| |||| |||| ||||| ||||| ||||||||||||||| |||||    
T  31681 ggaaatatgagttttatgaaaagattgatttttgggttatgtgtatgatcattattaatagttgactgtgt 31751  T

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Target: scaffold0054; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 31247 - 31299
Alignment:
Q  18 gtaactaattgttaggtgttataatttaaagagtatgattcataactgttgtt 70  Q
    ||||||| | |||| || ||||||||||||||| ||||||||||| |||||||    
T  31247 gtaactagtggttacgtattataatttaaagagcatgattcataattgttgtt 31299  T

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