View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7994_low_11 (Length: 342)
Name: NF7994_low_11
Description: NF7994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7994_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 283
Target Start/End: Original strand, 52756390 - 52756673
Alignment:
| Q |
7 |
gaaacaaagatgctagtttggaaaactctcaagaaaactcaatatgacagaggcgagccacaaggtcccagcgagcatttcagcaagtttttcaaaacct |
106 |
Q |
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| T |
52756390 |
gaaacaaagatgctagtttggaaaattctcaagaaaactcaatatgacagaggcgagccacaaggtcccagcgagcatttcagcaagtttttcaaaacct |
52756489 |
T |
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| Q |
107 |
gtcaattttgcatcctagatggggtgaccgtaaatcaaaaaagttggacatttttcgcaaagatagc-------nnnnnnnncacgtgataatatgtttg |
199 |
Q |
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| T |
52756490 |
gtcaattttgcatcctagatggggtgaccgtaaatcataaaagttggacatttttcgcaaagatagcaaaaaaaaaaaaaaacacgtgataatatgtttg |
52756589 |
T |
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| Q |
200 |
tcaagagatacaaaacactattttctattaagatggtcaaatgcaagattgtgtgtcttttcacatttgcatacatgttacata |
283 |
Q |
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| T |
52756590 |
tcaagagatacaaaacactattttctattaagatggtcaaatgcaagattgtgtgtcttttcacatttgcatacatgttacata |
52756673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 283 - 326
Target Start/End: Original strand, 52756809 - 52756852
Alignment:
| Q |
283 |
aacaatgaccaatttggtgcgcataacaattatgttgatgaaac |
326 |
Q |
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| T |
52756809 |
aacaatgaccaatttggtgcgtataacaattatgttgatgaaac |
52756852 |
T |
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