View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7994_low_12 (Length: 314)
Name: NF7994_low_12
Description: NF7994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7994_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 85 - 305
Target Start/End: Complemental strand, 52035568 - 52035348
Alignment:
| Q |
85 |
cctcatgaagggtaagattctgacaatattggagcactttgatcaagcagttcaagggggtacaaagataagccgaagctcgaggtgagttatgttaaga |
184 |
Q |
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| T |
52035568 |
cctcatgaagggtaagattctgacaatattggagcactttgatcaagcagttcaagtgggtacaaagataagccgaagctcgaggtgagttatgttaaga |
52035469 |
T |
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| Q |
185 |
aaagcttgacattgttggttggacatctagacaaacattagaaatcaatttcaacttattgtaactttaacaaaatagcattgttactcggtctctgtcc |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52035468 |
aaagcttgacattgttggttggacatctagacaaacattagaaatcaatttcaacttattgtaactttaacaaaatagcattgttactcggtctctgtcc |
52035369 |
T |
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| Q |
285 |
aacaatccccttcctctctgc |
305 |
Q |
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||||||||||||||||||||| |
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| T |
52035368 |
aacaatccccttcctctctgc |
52035348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 52035713 - 52035654
Alignment:
| Q |
17 |
caaatagattccgtggtttcatgcacattttgtcaccaattccatgtccatcaaactaac |
76 |
Q |
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| T |
52035713 |
caaatagattccgtggtttcatgcacattttgtcaccaattccatgtccatcaaactaac |
52035654 |
T |
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