View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7994_low_2 (Length: 633)
Name: NF7994_low_2
Description: NF7994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7994_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 15 - 560
Target Start/End: Original strand, 41521710 - 41522276
Alignment:
| Q |
15 |
cagagattagagagccaagnnnnnnntccagaatttggcttggaacttttccaactcctgatatggctgctagagctcatgatgtggctgctcttactat |
114 |
Q |
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| T |
41521710 |
cagagattagagagccaagaaaaaaatcaagaatttggctcggaacttttccaactcctgatatggctgctagagctcatgatgtggctgctcttactat |
41521809 |
T |
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| Q |
115 |
caaaggctcttcggcttacctcaattttcccgaattagctgccgtgctgccacgtgcagctagtgcctctcctaaagacatccaagttgctgctgctaaa |
214 |
Q |
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| T |
41521810 |
caaaggctcttcggcttacctcaattttcccgaattagctgccgtgctgccacgtgcagctagtgcctctcctaaagacatccaagttgcggctgctaaa |
41521909 |
T |
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| Q |
215 |
gcagccgcaactgtttataaccatgcaatcaccgatcagattgagttagaagctgaagccgagccgagccaagct---------------------tcgt |
293 |
Q |
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| T |
41521910 |
gcagccgcaactgtttataaccatgcaatcaccgatcagattgagttagaagctgaagccgagccgagccaagctgtttcttcttcgtcgtcgtcttctt |
41522009 |
T |
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| Q |
294 |
cttcttcttcttcgagtcacaatgaaggatcatcattgaagggtgaggatgacatgtttttgaacctacctgatctcacacttgatttaagacatagtgg |
393 |
Q |
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| T |
41522010 |
cttcttcttcttcgagtcacaatgaaggatcatcattgaagggtgaggatgacatgtttttgaacctacctgatctcacacttgatttaagacatagtgg |
41522109 |
T |
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| Q |
394 |
tgatgatgggttttattattcctcatcggcttggcttgtaaatggagctcaacatatcgactcgagttttcggcttgaagaccctattctatgggactct |
493 |
Q |
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| T |
41522110 |
tgatgatgggttttattattcctcatcagcttggcttgtaaatggagctcaacatatcgactcgagttttcggcttgaagaccctattctatgggactct |
41522209 |
T |
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| Q |
494 |
tatccagtcacataatttatcatacatccaacttccctttgtatgcttatgttggtcttcaatacta |
560 |
Q |
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| T |
41522210 |
tatcaagtcacataatttatcatacatccaacttccctttgtatgcttatgttggtcttcaatacta |
41522276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 3021250 - 3021315
Alignment:
| Q |
47 |
atttggcttggaacttttccaactcctgatatggctgctagagctcatgatgtggctgctcttact |
112 |
Q |
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| T |
3021250 |
atttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttact |
3021315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 3030464 - 3030529
Alignment:
| Q |
47 |
atttggcttggaacttttccaactcctgatatggctgctagagctcatgatgtggctgctcttact |
112 |
Q |
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| T |
3030464 |
atttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttact |
3030529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 3038119 - 3038184
Alignment:
| Q |
47 |
atttggcttggaacttttccaactcctgatatggctgctagagctcatgatgtggctgctcttact |
112 |
Q |
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|||||||||||||| | |||||||||||| |||||||| | || |||||||| ||||| |||||| |
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| T |
3038119 |
atttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttact |
3038184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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