View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7994_low_21 (Length: 232)
Name: NF7994_low_21
Description: NF7994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7994_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 24 - 219
Target Start/End: Original strand, 34873152 - 34873347
Alignment:
| Q |
24 |
ttgttttatggcacataacataacacatgctatattctagaaagcaaggacagacactgacatgaaaactgttccaatgcactgagtaaacatgtaagtc |
123 |
Q |
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| T |
34873152 |
ttgttttatggcacataacataacacatgctatattctagaaagcaaggacacacactgacatgaaaaatgttccaatgcactgagtaaacatgtaagtc |
34873251 |
T |
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| Q |
124 |
atgtatctatttcatattttaactcgataaggccatttaacattgaaaaataaaattaggattttctaaataccaagtattatcgacacagaacat |
219 |
Q |
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| T |
34873252 |
atgtatctatttcatattttaactcgataaggccatttaacattgaaaaataaaattaggattttctaaataccaagtattatcgacacagaacat |
34873347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 9919180 - 9919035
Alignment:
| Q |
42 |
cataacacatgctatattctagaaagcaaggacagacactgacatgaaaactgttccaatgcactgagtaaacatgtaagtcatgtatctatttcata-t |
140 |
Q |
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| T |
9919180 |
cataacacatactatattctagaaagcaaggacacacactgacatgaaaattgttccaatgcactaaggaaacatgttaatcttgcatctgtttcatatt |
9919081 |
T |
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| Q |
141 |
tttaactcgataaggccatttaacattgaaaaataaaattaggatt |
186 |
Q |
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| T |
9919080 |
tttaactcgacatggccatttaacattgaaaaataaaattaggatt |
9919035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 34874885 - 34874950
Alignment:
| Q |
111 |
aaacatgtaagtcatgtatctatttcatattttaactcgataaggccatttaacattgaaaaataaaatta |
181 |
Q |
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| T |
34874885 |
aaacatgttagtcatgtatctgtttcatattttaactc-----ggtcatttaacattgaaaaataaaatta |
34874950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 35037631 - 35037601
Alignment:
| Q |
1 |
tggttgtacaaatatcatttctcttgtttta |
31 |
Q |
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| T |
35037631 |
tggttgtacaaatatcatttctcttgtttta |
35037601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 3155865 - 3155836
Alignment:
| Q |
1 |
tggttgtacaaatatcatttctcttgtttt |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3155865 |
tggttgtacaaatatcatttctcttgtttt |
3155836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 694302 - 694273
Alignment:
| Q |
1 |
tggttgtacaaatatcatttctcttgtttt |
30 |
Q |
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| T |
694302 |
tggttgtacaaatatcatttctcttgtttt |
694273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 24766174 - 24766145
Alignment:
| Q |
1 |
tggttgtacaaatatcatttctcttgtttt |
30 |
Q |
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| T |
24766174 |
tggttgtacaaatatcatttctcttgtttt |
24766145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 34442135 - 34442106
Alignment:
| Q |
1 |
tggttgtacaaatatcatttctcttgtttt |
30 |
Q |
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|
|||||||||||||||||||||||||||||| |
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| T |
34442135 |
tggttgtacaaatatcatttctcttgtttt |
34442106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 45272198 - 45272227
Alignment:
| Q |
1 |
tggttgtacaaatatcatttctcttgtttt |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
45272198 |
tggttgtacaaatatcatttctcttgtttt |
45272227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 2005753 - 2005725
Alignment:
| Q |
2 |
ggttgtacaaatatcatttctcttgtttt |
30 |
Q |
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| T |
2005753 |
ggttgtacaaatatcatttctcttgtttt |
2005725 |
T |
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