View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7994_low_3 (Length: 540)

Name: NF7994_low_3
Description: NF7994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7994_low_3
NF7994_low_3
[»] chr4 (11 HSPs)
chr4 (20-530)||(50061746-50062256)
chr4 (38-98)||(21691349-21691409)
chr4 (42-99)||(33456269-33456326)
chr4 (38-99)||(33843586-33843647)
chr4 (38-99)||(49138964-49139025)
chr4 (38-98)||(16551853-16551913)
chr4 (42-95)||(35064962-35065015)
chr4 (38-91)||(46344960-46345013)
chr4 (62-103)||(56013913-56013954)
chr4 (59-99)||(29728917-29728957)
chr4 (65-105)||(54705547-54705587)
[»] chr8 (4 HSPs)
chr8 (20-530)||(44141168-44141679)
chr8 (40-99)||(10367896-10367955)
chr8 (20-99)||(35494916-35494995)
chr8 (38-74)||(13384783-13384819)
[»] scaffold0314 (1 HSPs)
scaffold0314 (42-98)||(17322-17378)
[»] chr3 (4 HSPs)
chr3 (38-101)||(52141374-52141437)
chr3 (42-99)||(1290676-1290733)
chr3 (42-99)||(3845245-3845302)
chr3 (42-99)||(52363960-52364017)
[»] chr2 (3 HSPs)
chr2 (40-99)||(33047683-33047742)
chr2 (40-99)||(30503104-30503163)
chr2 (42-99)||(7629757-7629814)
[»] scaffold0168 (1 HSPs)
scaffold0168 (38-99)||(31721-31782)
[»] chr6 (3 HSPs)
chr6 (38-95)||(25195493-25195550)
chr6 (38-105)||(5724759-5724826)
chr6 (39-99)||(31710512-31710572)
[»] chr5 (5 HSPs)
chr5 (42-99)||(38845644-38845701)
chr5 (38-99)||(18851211-18851272)
chr5 (38-99)||(22226365-22226426)
chr5 (42-99)||(3043137-3043194)
chr5 (42-95)||(11647981-11648034)
[»] scaffold0197 (1 HSPs)
scaffold0197 (38-99)||(31544-31605)
[»] chr7 (1 HSPs)
chr7 (42-99)||(46325570-46325627)
[»] chr1 (5 HSPs)
chr1 (38-99)||(28084017-28084078)
chr1 (42-104)||(15478134-15478196)
chr1 (42-99)||(8130853-8130910)
chr1 (42-103)||(36780250-36780311)
chr1 (38-99)||(45660878-45660938)


Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 20 - 530
Target Start/End: Original strand, 50061746 - 50062256
Alignment:
Q  20 aatcagacatgttagaactcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacatatacaaagtcgtacaagaata 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50061746 aatcagacatgttagaactcagaatcaattctagacctccagaatcaattttggttcctctagaagtggaaccaaacatatacaaagtcgtacaagaata 50061845  T
Q  120 caagcaaacgggtaaaattgtcctaaaagtaaatcatcagtaacaacaaccaagcagctgaagcaaagtacaagcaatcgctacaggaaataaagctttg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50061846 caagcaaacgggtaaaattgtcctaaaagtaaatcatcagtaacaacaaccaagcagctgaagcaaagtacaagcaatcgctacaggaaataaagctttg 50061945  T
Q  220 aacttaaaaattagtattacaaagaaatccaaccttttgaagcttatagcgaattctaacttctggattaggagaatacatcttttgttttgccttcaaa 319  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  50061946 aacttaaaaattagtattacaaagaaatccaaccttttcaagcttatagcgaatcctaacttctggattaggagaatacatcttttgttttgccttcaaa 50062045  T
Q  320 cgatagaatctgagctcatttagcttggcctttcttgannnnnnnnnnnnattctggttcttattcgcagaaccaatatcatcaggcttgtatagcgaga 419  Q
    ||| ||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50062046 cgaaagaatctgagctcatttagcttggcctttcttgattttttctttttattctggttcttattcgcagaaccaatatcatcaggcttgtatagcgaga 50062145  T
Q  420 accgtacaacatcattttgggtcttcagttcaactgactcattacttgtgtatctggaaggtagccagtttccctgattaccatggcttcgaatgatatt 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50062146 accgtacaacatcattttgggtcttcagttcaactgactcattacttgtgtatctggaaggtagccagtttccctgattaccatggcttcgaatgatatt 50062245  T
Q  520 tgatctctgct 530  Q
    |||||||||||    
T  50062246 tgatctctgct 50062256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 21691349 - 21691409
Alignment:
Q  38 tcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacat 98  Q
    ||||||||||||||| ||||||| |||||||| |||| |||||||||||||||||||||||    
T  21691349 tcagaatcaattctacacctccagaatcaattctggtccctctagaagtggaaccaaacat 21691409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 33456326 - 33456269
Alignment:
Q  42 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    ||||||||||| || | ||||||||||| | || ||||||||||||||||||||||||    
T  33456326 aatcaattctacacattcaaaatcaattatagtccctctagaagtggaaccaaacata 33456269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 33843647 - 33843586
Alignment:
Q  38 tcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    ||||||| ||||||| ||||| | ||||||||||||  |||||||||||| |||||||||||    
T  33843647 tcagaattaattctacacctctagaatcaattttggaccctctagaagtgaaaccaaacata 33843586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 49138964 - 49139025
Alignment:
Q  38 tcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    ||||||||||||||| ||||| | ||||||||||||   || ||||||||||||||||||||    
T  49138964 tcagaatcaattctacacctctagaatcaattttggccactttagaagtggaaccaaacata 49139025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 16551913 - 16551853
Alignment:
Q  38 tcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacat 98  Q
    ||||||||||||||| ||||| ||||||||||||| |  ||||  ||||||||||||||||    
T  16551913 tcagaatcaattctacacctctaaaatcaattttgatctctctgaaagtggaaccaaacat 16551853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 35065015 - 35064962
Alignment:
Q  42 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaa 95  Q
    ||||||||||| ||||||| |||||||||||   |||| |||||||||||||||    
T  35065015 aatcaattctacacctccataatcaattttgacccctcgagaagtggaaccaaa 35064962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 46344960 - 46345013
Alignment:
Q  38 tcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaac 91  Q
    ||||||| |||| || ||||||| ||||||||||||  ||||||||||||||||    
T  46344960 tcagaattaattatacacctccataatcaattttgggccctctagaagtggaac 46345013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 56013913 - 56013954
Alignment:
Q  62 aatcaattttggttcctctagaagtggaaccaaacatataca 103  Q
    |||||||| |||||| |||||||| |||||||||||||||||    
T  56013913 aatcaattatggttcttctagaagaggaaccaaacatataca 56013954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 29728957 - 29728917
Alignment:
Q  59 caaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    ||||||||||||||| ||||||| |||||||||||| ||||    
T  29728957 caaaatcaattttggatcctctaaaagtggaaccaatcata 29728917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 54705547 - 54705587
Alignment:
Q  65 caattttggttcctctagaagtggaaccaaacatatacaaa 105  Q
    |||||||||  |||||||||||||||||||||||| |||||    
T  54705547 caattttggcccctctagaagtggaaccaaacatacacaaa 54705587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 20 - 530
Target Start/End: Original strand, 44141168 - 44141679
Alignment:
Q  20 aatcagacatgttagaactcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacatatacaaagtcgtacaagaata 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141168 aatcagacatgttagaactcagaatcaattctagacctccagaatcaattttggttcctctagaagtggaaccaaacatatacaaagtcgtacaagaata 44141267  T
Q  120 caagcaaacgggtaaaattgtcctaaaagtaaatcatcagtaacaacaaccaagcagctgaagcaaagtacaagcaatcgctacaggaaataaagctttg 219  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141268 caagctaacgggtaaaattgtcctataagtaaatcatcagtaacaacaaccaagcagctgaagcaaagtacaagcaatcgctacaggaaataaagctttg 44141367  T
Q  220 aacttaaaaattagtattacaaagaaatccaaccttttgaagcttatagcgaattctaacttctggattaggagaatacatcttttgttttgccttcaaa 319  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44141368 aacttaaaaattagtattacaaagaaatccaaccttttcaagcttatagcgaatcctaacttctggattaggagaatacatcttttgttttgccttcaaa 44141467  T
Q  320 cgatagaatctgagctcatttagcttggcctttcttga-nnnnnnnnnnnnattctggttcttattcgcagaaccaatatcatcaggcttgtatagcgag 418  Q
    ||| ||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141468 cgaaagaatctgagctcatttagcttggcctttcttgatttttttctttttattctggttcttattcgcagaaccaatatcatcaggcttgtatagcgag 44141567  T
Q  419 aaccgtacaacatcattttgggtcttcagttcaactgactcattacttgtgtatctggaaggtagccagtttccctgattaccatggcttcgaatgatat 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141568 aaccgtacaacatcattttgggtcttcagttcaactgactcattacttgtgtatctggaaggtagccagtttccctgattaccatggcttcgaatgatat 44141667  T
Q  519 ttgatctctgct 530  Q
    ||||||||||||    
T  44141668 ttgatctctgct 44141679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 10367955 - 10367896
Alignment:
Q  40 agaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    ||||||||||||| | ||||| ||||||||||||  ||||||||||| ||||||||||||    
T  10367955 agaatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacata 10367896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 35494995 - 35494916
Alignment:
Q  20 aatcagacatgttagaactcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    ||||| ||||||||||||| |||||||||| |  ||||||| |||||||  |||  ||| |||||||||| |||||||||    
T  35494995 aatcaaacatgttagaactaagaatcaattgtgcacctccagaatcaatcatggcccctttagaagtggacccaaacata 35494916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 13384783 - 13384819
Alignment:
Q  38 tcagaatcaattctagacctccaaaatcaattttggt 74  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  13384783 tcagaatcaattctacacctccaaaatcaattatggt 13384819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 17378 - 17322
Alignment:
Q  42 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacat 98  Q
    ||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||    
T  17378 aatcaattctacacctccagaatcaattttggttactctagaagtggaaccaaacat 17322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 52141374 - 52141437
Alignment:
Q  38 tcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacatata 101  Q
    |||||||| |||||| ||||| |||||||||| |||| ||||||||||||||||||||||||||    
T  52141374 tcagaatctattctacacctcaaaaatcaattatggtccctctagaagtggaaccaaacatata 52141437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 1290733 - 1290676
Alignment:
Q  42 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    ||||||||||| ||||| | |||||||||| |||||||||||||||||||||||||||    
T  1290733 aatcaattctacacctctagaatcaattttagttcctctagaagtggaaccaaacata 1290676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 3845245 - 3845302
Alignment:
Q  42 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    ||||||||||| ||||| | |||||||||||||| ||| | |||||||||||||||||    
T  3845245 aatcaattctacacctctagaatcaattttggttactccaaaagtggaaccaaacata 3845302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 52364017 - 52363960
Alignment:
Q  42 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    |||||||| || ||||| | ||||||||||||| |||||| |||||||||||||||||    
T  52364017 aatcaattatacacctctataatcaattttggtccctctaaaagtggaaccaaacata 52363960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 33047683 - 33047742
Alignment:
Q  40 agaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| | |||||||||||    
T  33047683 agaatcaattctacacctccaaaatcaattttggtccctctagaagcgaaaccaaacata 33047742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 30503163 - 30503104
Alignment:
Q  40 agaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    ||||||||||||| || ||||||||||||||||   ||| ||||||||||||||| ||||    
T  30503163 agaatcaattctacacttccaaaatcaattttgacccctttagaagtggaaccaagcata 30503104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 7629814 - 7629757
Alignment:
Q  42 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    ||||||||||| ||||| | ||||||| |||| ||||| | |||||||||||||||||    
T  7629814 aatcaattctacacctctagaatcaatcttggctcctccaaaagtggaaccaaacata 7629757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 31782 - 31721
Alignment:
Q  38 tcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    ||||||||||||||| ||||| | |||||||||||||  |||||||||||||||||||||||    
T  31782 tcagaatcaattctacacctctagaatcaattttggtcactctagaagtggaaccaaacata 31721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 25195493 - 25195550
Alignment:
Q  38 tcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaa 95  Q
    |||||||||||| || || |||| ||||||||||||||||||||||||||||||||||    
T  25195493 tcagaatcaattatacacatccagaatcaattttggttcctctagaagtggaaccaaa 25195550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 5724759 - 5724826
Alignment:
Q  38 tcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacatatacaaa 105  Q
    ||||||||||||||| || || | ||| ||||||||  |||||||||||||||||||||||| |||||    
T  5724759 tcagaatcaattctacacttctagaattaattttggcccctctagaagtggaaccaaacatacacaaa 5724826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 31710512 - 31710572
Alignment:
Q  39 cagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    |||||||||||||| || |||| |||||||| ||||  ||||| ||| |||||||||||||    
T  31710512 cagaatcaattctacacatccacaatcaattatggtctctctaaaagaggaaccaaacata 31710572  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 38845644 - 38845701
Alignment:
Q  42 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    ||||||||||| ||||||| |||||||||||||  |||||||||||||||||||||||    
T  38845644 aatcaattctacacctccagaatcaattttggtctctctagaagtggaaccaaacata 38845701  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 18851211 - 18851272
Alignment:
Q  38 tcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    ||||| ||||||||| | ||||| ||||||||||||| |||||||||| |||| ||||||||    
T  18851211 tcagagtcaattctacaactccataatcaattttggtccctctagaagcggaatcaaacata 18851272  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 22226365 - 22226426
Alignment:
Q  38 tcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    ||||||||||||||| || ||||||||||||| | |||| |||| |||||||| ||||||||    
T  22226365 tcagaatcaattctacacgtccaaaatcaattatagttcgtctaaaagtggaatcaaacata 22226426  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 3043137 - 3043194
Alignment:
Q  42 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    ||||||||||| ||||| | ||||||||||| |||||| | ||||||||||| |||||    
T  3043137 aatcaattctacacctctagaatcaattttgattcctccataagtggaaccagacata 3043194  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 11648034 - 11647981
Alignment:
Q  42 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaa 95  Q
    |||||||| || ||| |||||||||||| |||| |||||||||||||| |||||    
T  11648034 aatcaattatacaccaccaaaatcaattatggtccctctagaagtggagccaaa 11647981  T

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Target: scaffold0197 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 31544 - 31605
Alignment:
Q  38 tcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    |||||||||||| || |  || ||||||||||||||| |||||||||||||||| |||||||    
T  31544 tcagaatcaattttacaggtctaaaatcaattttggtccctctagaagtggaactaaacata 31605  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 46325627 - 46325570
Alignment:
Q  42 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    ||||||||||| || |||||||| || ||||||| ||||||||||| |||||||||||    
T  46325627 aatcaattctacacatccaaaattaaatttggtttctctagaagtgaaaccaaacata 46325570  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 28084017 - 28084078
Alignment:
Q  38 tcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    ||||||||||||||| ||  ||| | |||||||||| |||||||||||||||| ||||||||    
T  28084017 tcagaatcaattctacactaccagagtcaattttggctcctctagaagtggaatcaaacata 28084078  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 15478134 - 15478196
Alignment:
Q  42 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacatatacaa 104  Q
    ||||||||||| ||| | |||||||| ||||| ||||| | ||||||||||||||||| ||||    
T  15478134 aatcaattctacaccgctaaaatcaagtttggctcctccaaaagtggaaccaaacatacacaa 15478196  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 8130910 - 8130853
Alignment:
Q  42 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    ||||||||||| || |  | |||||||||||| ||||| |||||||||||||||||||    
T  8130910 aatcaattctacacttttagaatcaattttggctcctccagaagtggaaccaaacata 8130853  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 36780250 - 36780311
Alignment:
Q  42 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacatataca 103  Q
    ||||||||||| ||||||| |||||||| |||| |||||| ||||  || ||||||||||||    
T  36780250 aatcaattctacacctccataatcaattatggtccctctaaaagtaaaatcaaacatataca 36780311  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 45660878 - 45660938
Alignment:
Q  38 tcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 99  Q
    ||||||||||||||  ||||||||| ||||||||||  |||| ||||||||||| |||||||    
T  45660878 tcagaatcaattcttcacctccaaa-tcaattttggcccctccagaagtggaacgaaacata 45660938  T

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