View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7994_low_4 (Length: 504)

Name: NF7994_low_4
Description: NF7994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7994_low_4
NF7994_low_4
[»] chr8 (20 HSPs)
chr8 (12-504)||(45017319-45017807)
chr8 (432-504)||(43423164-43423236)
chr8 (429-504)||(9770858-9770933)
chr8 (429-504)||(39701465-39701540)
chr8 (427-504)||(16197012-16197089)
chr8 (442-504)||(14871420-14871482)
chr8 (444-504)||(36359901-36359961)
chr8 (433-504)||(8713835-8713906)
chr8 (432-502)||(35434344-35434414)
chr8 (426-504)||(44041360-44041438)
chr8 (450-499)||(8714371-8714420)
chr8 (451-504)||(9277056-9277109)
chr8 (429-502)||(13771881-13771954)
chr8 (442-499)||(35433895-35433952)
chr8 (429-502)||(36360149-36360222)
chr8 (450-502)||(9276998-9277050)
chr8 (427-503)||(11113534-11113610)
chr8 (450-502)||(25730198-25730250)
chr8 (450-502)||(25737684-25737736)
chr8 (432-504)||(29030190-29030262)
[»] chr7 (18 HSPs)
chr7 (432-504)||(33879579-33879651)
chr7 (429-504)||(31893236-31893311)
chr7 (450-504)||(1346487-1346541)
chr7 (432-504)||(8039652-8039724)
chr7 (432-504)||(34951525-34951597)
chr7 (433-504)||(5805028-5805099)
chr7 (427-504)||(20366033-20366109)
chr7 (443-504)||(36566278-36566339)
chr7 (429-504)||(19925091-19925166)
chr7 (429-504)||(23150625-23150700)
chr7 (442-504)||(1441496-1441558)
chr7 (450-504)||(21412873-21412927)
chr7 (450-504)||(21433151-21433205)
chr7 (442-504)||(31893539-31893601)
chr7 (452-504)||(4187515-4187567)
chr7 (446-502)||(4187569-4187625)
chr7 (428-504)||(5805657-5805732)
chr7 (450-502)||(19925343-19925395)
[»] chr5 (7 HSPs)
chr5 (426-504)||(13543067-13543145)
chr5 (443-502)||(26275504-26275563)
chr5 (426-504)||(13538452-13538530)
chr5 (451-502)||(32660327-32660378)
chr5 (426-499)||(18951286-18951359)
chr5 (450-502)||(19279236-19279288)
chr5 (432-504)||(20728517-20728589)
[»] scaffold0019 (3 HSPs)
scaffold0019 (429-504)||(124420-124495)
scaffold0019 (432-502)||(124132-124202)
scaffold0019 (450-504)||(124360-124414)
[»] chr6 (11 HSPs)
chr6 (429-504)||(16168451-16168526)
chr6 (433-504)||(11527526-11527597)
chr6 (429-499)||(20575398-20575468)
chr6 (442-504)||(28630680-28630742)
chr6 (443-504)||(10862651-10862712)
chr6 (429-504)||(32417776-32417851)
chr6 (429-504)||(32423617-32423692)
chr6 (429-499)||(20575715-20575783)
chr6 (442-504)||(32417468-32417530)
chr6 (442-504)||(32423309-32423371)
chr6 (450-502)||(20575602-20575654)
[»] chr4 (11 HSPs)
chr4 (433-504)||(43098475-43098546)
chr4 (429-504)||(26330070-26330145)
chr4 (426-504)||(52865939-52866017)
chr4 (432-504)||(43098171-43098243)
chr4 (450-504)||(2788797-2788851)
chr4 (450-504)||(2909182-2909236)
chr4 (450-504)||(9320017-9320071)
chr4 (443-504)||(19631763-19631824)
chr4 (443-504)||(52183487-52183548)
chr4 (450-502)||(52181782-52181834)
chr4 (443-499)||(52567743-52567799)
[»] scaffold0027 (2 HSPs)
scaffold0027 (450-504)||(9936-9990)
scaffold0027 (450-504)||(9401-9455)
[»] chr1 (11 HSPs)
chr1 (429-502)||(8903284-8903357)
chr1 (432-504)||(11897831-11897903)
chr1 (450-502)||(17898853-17898905)
chr1 (449-504)||(4030309-4030364)
chr1 (429-500)||(39302317-39302388)
chr1 (433-503)||(44963829-44963899)
chr1 (430-504)||(48352805-48352879)
chr1 (443-504)||(10685848-10685909)
chr1 (442-499)||(10686782-10686839)
chr1 (451-504)||(27351059-27351112)
chr1 (450-502)||(34254566-34254618)
[»] chr3 (2 HSPs)
chr3 (432-504)||(4276124-4276196)
chr3 (429-504)||(31247707-31247782)
[»] chr2 (11 HSPs)
chr2 (427-491)||(21813189-21813253)
chr2 (429-504)||(30907378-30907453)
chr2 (429-504)||(37543143-37543218)
chr2 (426-504)||(15505936-15506014)
chr2 (442-504)||(27893624-27893686)
chr2 (450-504)||(30907080-30907134)
chr2 (443-504)||(27893034-27893095)
chr2 (431-504)||(41265308-41265381)
chr2 (450-502)||(27893566-27893618)
chr2 (450-502)||(31263991-31264043)
chr2 (444-504)||(34429681-34429741)
[»] scaffold0746 (1 HSPs)
scaffold0746 (444-504)||(598-658)


Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 12 - 504
Target Start/End: Original strand, 45017319 - 45017807
Alignment:
Q  12 gagaagaaaaggttgggatatggagcatttgtgtgcttcttgctcatggttttctgtctttctacaatgattaagccttacctgggtcttatacattatt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45017319 gagaagaaaaggttgggatatggagcatttgtgtgcttcttgctcatggttttctgtctttctacaatgattaagccttacctgggtcttatacattatt 45017418  T
Q  112 gtgagtgttttacttnnnnnnnnnnnnnactcatttgcattgattaaccttagctatttctataatccaagattaattaagtacaagcatgcatgatgtt 211  Q
    |||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45017419 gtgagtgttttactttctctctct----actcatttgcattgattaaccttagctatttctataatccaagattaattaagtacaagcatgcatgatgtt 45017514  T
Q  212 cnnnnnnnnnnnnnnnnatagtgctttggcatgaaatgcaaatatattctgaatctcaataaggttatagtagagctagttcaaatctgctccataggaa 311  Q
    |                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45017515 ctttttgtttttattttatagtgctttggcatgaaatgcaaatatattctgaatctcaataaggttatagtagagctagttcaaatctgctccataagaa 45017614  T
Q  312 aaataaaattaaaggccaatcctagatgttgattgtactgtgtgttgaggcaatgattcttataagatgtgtttgtttatgtgatgattctttggcaaac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45017615 aaataaaattaaaggccaatcctagatgttgattgtactgtgtgttgaggcaatgattcttataacatgtgtttgtttatgtgatgattctttggcaaac 45017714  T
Q  412 tattgtaaaaagtatttggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  ||| |||| ||||||||||||||||||||||||    
T  45017715 tattgtaaaaagtatttggccaaatactacttttggtccttttagtttgatagaattcccaagttagtcctttaagtttcgaaagtttcaatt 45017807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 504
Target Start/End: Complemental strand, 43423236 - 43423164
Alignment:
Q  432 caaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||| ||| ||||||| |||||||||||| | ||||| |||| ||||| |||||||||||||||||||||||    
T  43423236 caaatgctacttttggtccttttagtttgacataattcctaagttagttatttaagtttcgaaagtttcaatt 43423164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 504
Target Start/End: Complemental strand, 9770933 - 9770858
Alignment:
Q  429 ggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||| | ||||||| |||||||||||| | |||||  ||| |||| ||||||||||||||||||||||||    
T  9770933 ggccaaataccacttttggtccttttagtttgacaaaattctcaagttagtcctttaagtttcgaaagtttcaatt 9770858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 504
Target Start/End: Complemental strand, 39701540 - 39701465
Alignment:
Q  429 ggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||| |  |||||| |||||||||||| |||||||  ||| |||||||||||||||| ||||||||||||    
T  39701540 ggccaaataccacgtttggtccttttagtttgacagaattctcaagttagttctttaagtttcaaaagtttcaatt 39701465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 427 - 504
Target Start/End: Original strand, 16197012 - 16197089
Alignment:
Q  427 ttggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||||||| ||||||| ||||| |||||| ||||||   ||| |||| | ||||||||||||||||||||||    
T  16197012 ttggccaaatactacttttggtccttttcgtttgacagaattatcaagttagtccattaagtttcgaaagtttcaatt 16197089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 504
Target Start/End: Complemental strand, 14871482 - 14871420
Alignment:
Q  442 ttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||||| |||| ||||||| ||||||| |||| ||||  |||||||||||||||||||||||    
T  14871482 ttttggtcctttaagtttgacagaattcctaagttagtcttttaagtttcgaaagtttcaatt 14871420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 504
Target Start/End: Original strand, 36359901 - 36359961
Alignment:
Q  444 ttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||| |||||||||||| ||||||   ||| |||| ||||||||||||||||||||||||    
T  36359901 ttggtccttttagtttgacagaatttccaagttagtcctttaagtttcgaaagtttcaatt 36359961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 504
Target Start/End: Original strand, 8713835 - 8713906
Alignment:
Q  433 aaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||| | ||||||| |||||||||||| | |||||  ||| |||| ||||||||||| ||||||||||||    
T  8713835 aaataccacttttggtccttttagtttgacataattctcaagttagtcctttaagtttcaaaagtttcaatt 8713906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 432 - 502
Target Start/End: Complemental strand, 35434414 - 35434344
Alignment:
Q  432 caaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaa 502  Q
    ||||| ||| ||||||| |||||||||||| | ||||| |||| || | ||||||||||| ||||||||||    
T  35434414 caaatgctatttttggtccttttagtttgacataattcctaagttaatcctttaagtttcaaaagtttcaa 35434344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 504
Target Start/End: Complemental strand, 44041438 - 44041360
Alignment:
Q  426 tttggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||| ||||| ||||||| || |||||||||||| | ||||   ||| |||| |||||||||| |||||||||||||    
T  44041438 tttggcaaaatattagtttttgtccttttagtttgacaaaattttcaagttagtcctttaagttttgaaagtttcaatt 44041360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 499
Target Start/End: Complemental strand, 8714420 - 8714371
Alignment:
Q  450 cttttagtttgatagaattcataagctagttctttaagtttcgaaagttt 499  Q
    ||||||||||||||||||||  ||| ||||| |||||||||| |||||||    
T  8714420 cttttagtttgatagaattcgcaagttagttttttaagtttctaaagttt 8714371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 504
Target Start/End: Complemental strand, 9277109 - 9277056
Alignment:
Q  451 ttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||||||||| |||||||  ||| ||||  |||||||||||||||||||||||    
T  9277109 ttttagtttgacagaattcccaagttagtcttttaagtttcgaaagtttcaatt 9277056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 502
Target Start/End: Complemental strand, 13771954 - 13771881
Alignment:
Q  429 ggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaa 502  Q
    |||||||||| | |||||||  ||||||||||| | |||||  ||| |||| ||||||||||| ||||||||||    
T  13771954 ggccaaataccatttttggtcattttagtttgacataattcccaagttagtcctttaagtttcaaaagtttcaa 13771881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 499
Target Start/End: Original strand, 35433895 - 35433952
Alignment:
Q  442 ttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagttt 499  Q
    ||||||| |||||| |||||||||||||| ||| ||||  |||||||||| |||||||    
T  35433895 ttttggtccttttaatttgatagaattcacaagttagtcatttaagtttcaaaagttt 35433952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 502
Target Start/End: Complemental strand, 36360222 - 36360149
Alignment:
Q  429 ggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaa 502  Q
    |||||||||| | |||||||  ||||||||||| ||||||   ||| ||||  |||||||||||||||||||||    
T  36360222 ggccaaataccaattttggtcattttagtttgacagaatttccaagttagtcttttaagtttcgaaagtttcaa 36360149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 502
Target Start/End: Complemental strand, 9277050 - 9276998
Alignment:
Q  450 cttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaa 502  Q
    |||||||||||||||||||   ||| |||| ||||||||||| ||||||||||    
T  9277050 cttttagtttgatagaatttccaagttagtcctttaagtttcaaaagtttcaa 9276998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 503
Target Start/End: Original strand, 11113534 - 11113610
Alignment:
Q  427 ttggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaat 503  Q
    |||||||||||| | ||| | | |||||||||||| | ||||| |||| |||| |||||| ||| ||||||||||||    
T  11113534 ttggccaaataccactttagatccttttagtttgacataattcctaagttagtcctttaaattttgaaagtttcaat 11113610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 502
Target Start/End: Complemental strand, 25730250 - 25730198
Alignment:
Q  450 cttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaa 502  Q
    |||||||||||||||||||   ||| |||| |||||||||| |||||||||||    
T  25730250 cttttagtttgatagaatttccaagttagtcctttaagttttgaaagtttcaa 25730198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 502
Target Start/End: Complemental strand, 25737736 - 25737684
Alignment:
Q  450 cttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaa 502  Q
    |||||||||||||||||||   ||| |||| |||||||||| |||||||||||    
T  25737736 cttttagtttgatagaatttccaagttagtcctttaagttttgaaagtttcaa 25737684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 504
Target Start/End: Complemental strand, 29030262 - 29030190
Alignment:
Q  432 caaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||||| | |||||||  ||||||||||| | ||||| | || || | ||||||||||||||||||||||||    
T  29030262 caaataccacttttggtcattttagtttgacataattccttagttattcctttaagtttcgaaagtttcaatt 29030190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 432 - 504
Target Start/End: Complemental strand, 33879651 - 33879579
Alignment:
Q  432 caaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||||| | ||||||| |||||||||||| |||||||| ||| |||| ||||||||||||||||||||||||    
T  33879651 caaataccatttttggtccttttagtttgacagaattcacaagttagtcctttaagtttcgaaagtttcaatt 33879579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 429 - 504
Target Start/End: Original strand, 31893236 - 31893311
Alignment:
Q  429 ggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||| | ||||||| |||||||||||| |||||||  ||| ||||| |||||||||||||||||||||||    
T  31893236 ggccaaataccatttttggttcttttagtttgacagaattctcaagttagttttttaagtttcgaaagtttcaatt 31893311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 450 - 504
Target Start/End: Original strand, 1346487 - 1346541
Alignment:
Q  450 cttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||||| ||||||| |||| |||| ||||||||||||||||||||||||    
T  1346487 cttttagtttgacagaattcttaagttagtgctttaagtttcgaaagtttcaatt 1346541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 504
Target Start/End: Original strand, 8039652 - 8039724
Alignment:
Q  432 caaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||||| | |||| || |||||||||||| | |||||  ||| |||||||||||||||||||||||||||||    
T  8039652 caaataccactttttgtccttttagtttgacataattctcaagttagttctttaagtttcgaaagtttcaatt 8039724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 504
Target Start/End: Complemental strand, 34951597 - 34951525
Alignment:
Q  432 caaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||||||| |||||||  ||||||||||| ||||||   ||| |||| ||||||||||||||||||||||||    
T  34951597 caaatactatttttggtctttttagtttgacagaattatcaagttagtcctttaagtttcgaaagtttcaatt 34951525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 504
Target Start/End: Original strand, 5805028 - 5805099
Alignment:
Q  433 aaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||| | ||| ||| |||||||||||| |||||||  ||| |||| ||||||||||||||||||||||||    
T  5805028 aaataccactttcggtccttttagtttgacagaattctcaagttagtcctttaagtttcgaaagtttcaatt 5805099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 427 - 504
Target Start/End: Original strand, 20366033 - 20366109
Alignment:
Q  427 ttggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||||  | ||||||| |||||||||| | |||||||  ||| |||| ||||||||||||||||||||||||    
T  20366033 ttggccaaatatcatttttggtccttttagttt-acagaattctcaagttagtcctttaagtttcgaaagtttcaatt 20366109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 443 - 504
Target Start/End: Original strand, 36566278 - 36566339
Alignment:
Q  443 tttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||| |||||||||||| ||||||| |||| ||||  ||||||||| |||||||||||||    
T  36566278 tttggtccttttagtttgacagaattcttaagttagtcatttaagttttgaaagtttcaatt 36566339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 504
Target Start/End: Original strand, 19925091 - 19925166
Alignment:
Q  429 ggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||||| |||||||  ||||||||||| ||||||   ||| || | ||| ||||||||||||||||||||    
T  19925091 ggccaaatactatttttggtctttttagtttgacagaatttccaagttactccttcaagtttcgaaagtttcaatt 19925166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 504
Target Start/End: Original strand, 23150625 - 23150700
Alignment:
Q  429 ggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||||||||||  |||||| |||||||||||| | |||||  ||| |||| |||||| ||| |||||||||||||    
T  23150625 ggccaaatactatgtttggtccttttagtttgacataattctcaagttagtcctttaaattttgaaagtttcaatt 23150700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 442 - 504
Target Start/End: Complemental strand, 1441558 - 1441496
Alignment:
Q  442 ttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||||| |||||||||||| | |||||  ||| |||| ||||| ||||||||||||||||||    
T  1441558 ttttggtccttttagtttgacataattcccaagttagtcctttaggtttcgaaagtttcaatt 1441496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 450 - 504
Target Start/End: Original strand, 21412873 - 21412927
Alignment:
Q  450 cttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||||| ||||||| |||| || | |||||||||| |||||||||||||    
T  21412873 cttttagtttgacagaattcttaagttaatcctttaagttttgaaagtttcaatt 21412927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 450 - 504
Target Start/End: Original strand, 21433151 - 21433205
Alignment:
Q  450 cttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||||| | |||||| ||| |||| |||||||||||||| |||||||||    
T  21433151 cttttagtttgacaaaattcacaagttagtcctttaagtttcgaatgtttcaatt 21433205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 442 - 504
Target Start/End: Complemental strand, 31893601 - 31893539
Alignment:
Q  442 ttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||||| |||||||||||| ||||||  |||| |||| ||||||||||  ||||||||||||    
T  31893601 ttttggtccttttagtttgacagaatttctaagttagtcctttaagttttaaaagtttcaatt 31893539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 504
Target Start/End: Original strand, 4187515 - 4187567
Alignment:
Q  452 tttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||| |||||||||||  || | |||||||||| |||||||||||||    
T  4187515 tttagtttgacagaattcataaattaatcctttaagtttagaaagtttcaatt 4187567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 502
Target Start/End: Original strand, 4187569 - 4187625
Alignment:
Q  446 ggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaa 502  Q
    ||||||||| |||||| | |||||  ||| |||||||||||||||| ||||||||||    
T  4187569 ggtactttttgtttgacataattcccaagttagttctttaagtttcaaaagtttcaa 4187625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 504
Target Start/End: Complemental strand, 5805732 - 5805657
Alignment:
Q  428 tggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||||||  |||||| |||||||||||| | ||||  |||| ||||  ||||||||| |||||||||||||    
T  5805732 tggccaaatactacctttggtccttttagtttgacaaaatt-ttaagttagtcatttaagttttgaaagtttcaatt 5805657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 502
Target Start/End: Complemental strand, 19925395 - 19925343
Alignment:
Q  450 cttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaa 502  Q
    |||||||||||| |||||||  ||| |||| ||||||||||| ||||||||||    
T  19925395 cttttagtttgacagaattcccaagttagtcctttaagtttcaaaagtttcaa 19925343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 426 - 504
Target Start/End: Original strand, 13543067 - 13543145
Alignment:
Q  426 tttggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||| || | ||||||| |||||||||||| | ||||| |||| || ||||||||||||||||||||||||||    
T  13543067 tttggccaaagaccacttttggtccttttagtttgacataattcctaagttaattctttaagtttcgaaagtttcaatt 13543145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 443 - 502
Target Start/End: Original strand, 26275504 - 26275563
Alignment:
Q  443 tttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaa 502  Q
    ||||||||||||||||||| ||||||  |||| |||||||||||||||| ||||||||||    
T  26275504 tttggtacttttagtttgacagaatttctaagttagttctttaagtttcaaaagtttcaa 26275563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 426 - 504
Target Start/End: Original strand, 13538452 - 13538530
Alignment:
Q  426 tttggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||| || | ||||||| |||||||||||| | ||||| |||| |||| ||||| ||||||||||||||||||    
T  13538452 tttggccaaagaccacttttggtccttttagtttgacataattcctaagttagtcctttacgtttcgaaagtttcaatt 13538530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 502
Target Start/End: Original strand, 32660327 - 32660378
Alignment:
Q  451 ttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaa 502  Q
    ||||||||||| ||||||| |||| |||| ||||||||||| ||||||||||    
T  32660327 ttttagtttgacagaattcctaagttagtcctttaagtttcaaaagtttcaa 32660378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 499
Target Start/End: Original strand, 18951286 - 18951359
Alignment:
Q  426 tttggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagttt 499  Q
    ||||||||||||  |  |||||| |||||||||||| |||||||  ||| |||| ||||||||||| |||||||    
T  18951286 tttggccaaataacacatttggtccttttagtttgacagaattcccaagttagtcctttaagtttcaaaagttt 18951359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 502
Target Start/End: Complemental strand, 19279288 - 19279236
Alignment:
Q  450 cttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaa 502  Q
    |||||||||||| | ||||| |||| ||||| |||||||||| ||||||||||    
T  19279288 cttttagtttgacaaaattcttaagttagttttttaagtttcaaaagtttcaa 19279236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 504
Target Start/End: Original strand, 20728517 - 20728589
Alignment:
Q  432 caaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||||| | |||||||  ||||||||||| ||||||   ||| |||| |||||||||||||||| |||||||    
T  20728517 caaataccacttttggtctttttagtttgacagaatttccaagttagtcctttaagtttcgaaagattcaatt 20728589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 504
Target Start/End: Complemental strand, 124495 - 124420
Alignment:
Q  429 ggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||| | ||||||| ||||| |||||||| |||||  ||| |||| ||||||||||||||||||||||||    
T  124495 ggccaaataccacttttggtcctttttgtttgatataattcccaagttagtcctttaagtttcgaaagtttcaatt 124420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 432 - 502
Target Start/End: Original strand, 124132 - 124202
Alignment:
Q  432 caaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaa 502  Q
    ||||||| | ||||||| |||||||||||| | |||||  ||| |||| ||||||||||| ||||||||||    
T  124132 caaataccacttttggtccttttagtttgacaaaattcccaagttagtcctttaagtttcaaaagtttcaa 124202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 450 - 504
Target Start/End: Complemental strand, 124414 - 124360
Alignment:
Q  450 cttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||||| ||||||   ||| |||| ||||||||||||||||||||||||    
T  124414 cttttagtttgacagaatttccaagttagtcctttaagtttcgaaagtttcaatt 124360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 504
Target Start/End: Original strand, 16168451 - 16168526
Alignment:
Q  429 ggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||| | ||||||| ||||||||||||||||||||  | | |||| |||||||||| |||||||||||||    
T  16168451 ggccaaataccacttttggtccttttagtttgatagaattctcacgttagtcctttaagttttgaaagtttcaatt 16168526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 504
Target Start/End: Original strand, 11527526 - 11527597
Alignment:
Q  433 aaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||| | ||||||| |||||| ||||| | ||||| |||| |||| ||||||||||||||||||||||||    
T  11527526 aaataccacttttggtccttttactttgacataattcctaagttagtcctttaagtttcgaaagtttcaatt 11527597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 499
Target Start/End: Original strand, 20575398 - 20575468
Alignment:
Q  429 ggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagttt 499  Q
    |||||||||| | | ||||| |||||||||||||||||||   ||| |||| |||||||||||||||||||    
T  20575398 ggccaaataccactattggtccttttagtttgatagaatttccaagttagtcctttaagtttcgaaagttt 20575468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 504
Target Start/End: Complemental strand, 28630742 - 28630680
Alignment:
Q  442 ttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||||| |||||||||||| | ||||| |||| ||||| ||||||||| |||||||||||||    
T  28630742 ttttggtccttttagtttgacataattcctaagttagttttttaagttttgaaagtttcaatt 28630680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 443 - 504
Target Start/End: Complemental strand, 10862712 - 10862651
Alignment:
Q  443 tttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||| |||||||||||| |||||||  ||| |||| |||||||||| |||||||||||||    
T  10862712 tttggtccttttagtttgacagaattctcaagttagtcctttaagttttgaaagtttcaatt 10862651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 504
Target Start/End: Complemental strand, 32417851 - 32417776
Alignment:
Q  429 ggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||| | ||||| |  ||||||||| | |||||||  ||| ||||||||||| |||||||||||||||||    
T  32417851 ggccaaataccacttttgatctttttagttttacagaattcccaagttagttctttaactttcgaaagtttcaatt 32417776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 504
Target Start/End: Complemental strand, 32423692 - 32423617
Alignment:
Q  429 ggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||| | ||||| |  ||||||||| | |||||||  ||| ||||||||||| |||||||||||||||||    
T  32423692 ggccaaataccacttttgatctttttagttttacagaattcccaagttagttctttaactttcgaaagtttcaatt 32423617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 499
Target Start/End: Complemental strand, 20575783 - 20575715
Alignment:
Q  429 ggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagttt 499  Q
    |||||||||| | ||||||| |||||||||||| |||||||  ||| ||||| ||||||||||||||||||    
T  20575783 ggccaaataccatttttggt-cttttagtttgacagaattctcaagttagtt-tttaagtttcgaaagttt 20575715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 442 - 504
Target Start/End: Original strand, 32417468 - 32417530
Alignment:
Q  442 ttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||||| |||||||||||| ||||||   ||| |||| ||||||||||||||||||| ||||    
T  32417468 ttttggtccttttagtttgacagaattttcaagttagtcctttaagtttcgaaagttttaatt 32417530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 442 - 504
Target Start/End: Original strand, 32423309 - 32423371
Alignment:
Q  442 ttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||||| |||||||||||| ||||||   ||| |||| ||||||||||||||||||| ||||    
T  32423309 ttttggtccttttagtttgacagaattttcaagttagtcctttaagtttcgaaagttttaatt 32423371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 502
Target Start/End: Complemental strand, 20575654 - 20575602
Alignment:
Q  450 cttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaa 502  Q
    |||||||||||| |||||||  ||| |||| ||||||||||| ||||||||||    
T  20575654 cttttagtttgacagaattcccaagttagtcctttaagtttcaaaagtttcaa 20575602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 433 - 504
Target Start/End: Complemental strand, 43098546 - 43098475
Alignment:
Q  433 aaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||| | ||||||| |||||||||||| ||||||  |||  |||||||||||||||||||||||||||||    
T  43098546 aaataccatttttggtccttttagtttgacagaatttctaacttagttctttaagtttcgaaagtttcaatt 43098475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 429 - 504
Target Start/End: Complemental strand, 26330145 - 26330070
Alignment:
Q  429 ggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||| | |||| || |||||||||||| |||||||  ||| |||| |||||||||| |||||||||||||    
T  26330145 ggccaaataccacttttagtccttttagtttgacagaattctcaagttagtcctttaagttttgaaagtttcaatt 26330070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 504
Target Start/End: Original strand, 52865939 - 52866017
Alignment:
Q  426 tttggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||||||||||| | |||| || |||||||||||| |||||||  ||| |||| |||||||||| |||||||| ||||    
T  52865939 tttggccaaataccactttttgtccttttagtttgacagaattctcaagttagtcctttaagttttgaaagtttaaatt 52866017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 504
Target Start/End: Original strand, 43098171 - 43098243
Alignment:
Q  432 caaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||||| | ||||||| |||||||||||| | ||||  |||| |||| |||||||||| |||||||||||||    
T  43098171 caaataccacttttggtccttttagtttgacaaaatttctaagttagtcctttaagttttgaaagtttcaatt 43098243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 450 - 504
Target Start/End: Original strand, 2788797 - 2788851
Alignment:
Q  450 cttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||||||  |||||  ||| |||| ||||||||||||||||||||||||    
T  2788797 cttttagtttgatgaaattctcaagttagtcctttaagtttcgaaagtttcaatt 2788851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 450 - 504
Target Start/End: Original strand, 2909182 - 2909236
Alignment:
Q  450 cttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||| | |||||||  ||| |||||||||||||||||||||| ||||||    
T  2909182 cttttagtttcacagaattctcaagttagttctttaagtttcgaaagtgtcaatt 2909236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 450 - 504
Target Start/End: Original strand, 9320017 - 9320071
Alignment:
Q  450 cttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||||| | |||||  ||| ||||| |||||||||||||||||||||||    
T  9320017 cttttagtttgacaaaattctcaagttagttttttaagtttcgaaagtttcaatt 9320071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 504
Target Start/End: Original strand, 19631763 - 19631824
Alignment:
Q  443 tttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||| |||||| ||||| | |||||  ||| |||| ||||||||||||||||||||||||    
T  19631763 tttggtccttttattttgacaaaattctcaagttagtcctttaagtttcgaaagtttcaatt 19631824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 504
Target Start/End: Complemental strand, 52183548 - 52183487
Alignment:
Q  443 tttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||| |||||||||| | | |||||  ||| |||| ||||||||||||||||||||||||    
T  52183548 tttggtccttttagttttacaaaattctcaagttagtcctttaagtttcgaaagtttcaatt 52183487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 502
Target Start/End: Original strand, 52181782 - 52181834
Alignment:
Q  450 cttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaa 502  Q
    |||||||||||| |||||||  ||| |||| ||||||||||| ||||||||||    
T  52181782 cttttagtttgacagaattcccaagttagtcctttaagtttcaaaagtttcaa 52181834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 499
Target Start/End: Original strand, 52567743 - 52567799
Alignment:
Q  443 tttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagttt 499  Q
    |||||| |||||||||||| ||||||| |||| ||||  |||||||||| |||||||    
T  52567743 tttggtccttttagtttgacagaattcttaagttagtcatttaagtttcaaaagttt 52567799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 450 - 504
Target Start/End: Complemental strand, 9990 - 9936
Alignment:
Q  450 cttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||||| |||||||  ||| |||||||||||||||||||||||||||||    
T  9990 cttttagtttgacagaattctcaagttagttctttaagtttcgaaagtttcaatt 9936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 450 - 504
Target Start/End: Original strand, 9401 - 9455
Alignment:
Q  450 cttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||||| ||||||| |||| ||||  ||||||||||| |||||||||||    
T  9401 cttttagtttgacagaattcttaagttagtcatttaagtttcggaagtttcaatt 9455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 502
Target Start/End: Complemental strand, 8903357 - 8903284
Alignment:
Q  429 ggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaa 502  Q
    |||||||||||| |||||||  ||||||||||| | |||||  ||| || | ||||||||||||||||||||||    
T  8903357 ggccaaatactacttttggtctttttagtttgacataattctcaagttaatcctttaagtttcgaaagtttcaa 8903284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 504
Target Start/End: Original strand, 11897831 - 11897903
Alignment:
Q  432 caaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||||| | |||||||  ||||||||||| |||||||  ||| ||||  |||||||||||||||||||||||    
T  11897831 caaataccacttttggtcattttagtttgacagaattctcaagttagtcatttaagtttcgaaagtttcaatt 11897903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 502
Target Start/End: Complemental strand, 17898905 - 17898853
Alignment:
Q  450 cttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaa 502  Q
    ||||||||||||||||||||| ||  |||| ||||||||||| ||||||||||    
T  17898905 cttttagtttgatagaattcacaaattagtcctttaagtttcaaaagtttcaa 17898853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 504
Target Start/End: Original strand, 4030309 - 4030364
Alignment:
Q  449 acttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||||||||||| | ||||| |||| || | ||||||||||||||||||||||||    
T  4030309 acttttagtttgacaaaattcttaagttaatcctttaagtttcgaaagtttcaatt 4030364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 500
Target Start/End: Original strand, 39302317 - 39302388
Alignment:
Q  429 ggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttc 500  Q
    |||||||||| | ||||| | |||||||||||| |||||||| ||  || ||||||||||||| ||||||||    
T  39302317 ggccaaataccacttttgtttcttttagtttgacagaattcacaaattaattctttaagtttcaaaagtttc 39302388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 503
Target Start/End: Original strand, 44963829 - 44963899
Alignment:
Q  433 aaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaat 503  Q
    |||||||| ||||| |  ||||||||||||||| |||  |||  ||| |||||||||||||||||||||||    
T  44963829 aaatactacttttgatctttttagtttgatagatttctaaagtaagtcctttaagtttcgaaagtttcaat 44963899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 430 - 504
Target Start/End: Complemental strand, 48352879 - 48352805
Alignment:
Q  430 gccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||||||| | ||||||| |||||||||||| |||||||   || ||||  ||||||||||||||| |||||||    
T  48352879 gccaaataccacttttggtccttttagtttgacagaattcccgagttagtcttttaagtttcgaaagattcaatt 48352805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 504
Target Start/End: Original strand, 10685848 - 10685909
Alignment:
Q  443 tttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||| |||||||||||| ||||||   ||| |||| |||||||||||||| |||||||||    
T  10685848 tttggtccttttagtttgacagaattttcaagttagtcctttaagtttcgaacgtttcaatt 10685909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 499
Target Start/End: Complemental strand, 10686839 - 10686782
Alignment:
Q  442 ttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagttt 499  Q
    ||||||| |||||||||||| ||||||   ||| |||| |||||||||||||||||||    
T  10686839 ttttggtccttttagtttgacagaattttcaagttagtcctttaagtttcgaaagttt 10686782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 504
Target Start/End: Original strand, 27351059 - 27351112
Alignment:
Q  451 ttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||| ||||| |||||||  ||| |||| ||||||||||||||||||||||||    
T  27351059 ttttactttgacagaattcgcaagttagtcctttaagtttcgaaagtttcaatt 27351112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 502
Target Start/End: Original strand, 34254566 - 34254618
Alignment:
Q  450 cttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaa 502  Q
    |||||||||||| ||||||| ||||  ||| ||||||||||| ||||||||||    
T  34254566 cttttagtttgacagaattcctaagtcagtcctttaagtttcaaaagtttcaa 34254618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 504
Target Start/End: Original strand, 4276124 - 4276196
Alignment:
Q  432 caaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||| || ||||||| |||||||||||| |  |||  |||| ||||||||||||||| |||||||||||||    
T  4276124 caaatattacttttggtccttttagtttgacaatatttttaagttagttctttaagttttgaaagtttcaatt 4276196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 504
Target Start/End: Complemental strand, 31247782 - 31247707
Alignment:
Q  429 ggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||  | ||||||| |||||| ||||| ||||||   ||| |||| ||||||||||||||||||||||||    
T  31247782 ggccaaatatcacttttggtccttttaatttgacagaatttccaagttagtcctttaagtttcgaaagtttcaatt 31247707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 491
Target Start/End: Original strand, 21813189 - 21813253
Alignment:
Q  427 ttggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttc 491  Q
    |||||||||||| | |||| || ||||||||||||||||||||  ||| |||| |||||||||||    
T  21813189 ttggccaaataccacttttagtccttttagtttgatagaattctcaagttagtcctttaagtttc 21813253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 504
Target Start/End: Complemental strand, 30907453 - 30907378
Alignment:
Q  429 ggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||| | ||||  | |||||||||||| | |||| ||||| ||||  |||||||||||||||||||||||    
T  30907453 ggccaaataccacttttaatccttttagtttgacaaaatttataagttagtcatttaagtttcgaaagtttcaatt 30907378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 504
Target Start/End: Complemental strand, 37543218 - 37543143
Alignment:
Q  429 ggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||| | ||||||| |||||||||||| ||||||   ||| ||||  ||||||||| |||||||||||||    
T  37543218 ggccaaataccatttttggttcttttagtttgacagaattttcaagttagtcttttaagttttgaaagtttcaatt 37543143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 504
Target Start/End: Original strand, 15505936 - 15506014
Alignment:
Q  426 tttggccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||| |||||||| ||||||| |||||||||||| ||||||  |||  || | |||||||||  |||||||||||||    
T  15505936 tttggctaaatactatttttggttcttttagtttgacagaatttttaaattactcctttaagttatgaaagtttcaatt 15506014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 442 - 504
Target Start/End: Complemental strand, 27893686 - 27893624
Alignment:
Q  442 ttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||||| |||||||||||| | |||||  ||| |||| |||||||||||| |||||||||||    
T  27893686 ttttggtccttttagtttgacaaaattctcaagttagtcctttaagtttcgtaagtttcaatt 27893624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 450 - 504
Target Start/End: Original strand, 30907080 - 30907134
Alignment:
Q  450 cttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||||||| |||||||  ||| ||||  |||||||||||||||||||||||    
T  30907080 cttttagtttgacagaattctcaagttagtcttttaagtttcgaaagtttcaatt 30907134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 504
Target Start/End: Original strand, 27893034 - 27893095
Alignment:
Q  443 tttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||| |||||||||||| |||||||  ||| || | |||||| |||||||||||||||||    
T  27893034 tttggtccttttagtttgacagaattctcaagttaatcctttaaatttcgaaagtttcaatt 27893095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 504
Target Start/End: Complemental strand, 41265381 - 41265308
Alignment:
Q  431 ccaaatactagttttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    |||||||| | ||||| | |||||||||||| ||||||   ||| ||||  |||||||||||||||||||||||    
T  41265381 ccaaatacaacttttgatccttttagtttgagagaattatcaagttagtcatttaagtttcgaaagtttcaatt 41265308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 502
Target Start/End: Complemental strand, 27893618 - 27893566
Alignment:
Q  450 cttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaa 502  Q
    |||||||||||| |||||||  ||| |||| ||||||||||| ||||||||||    
T  27893618 cttttagtttgacagaattcccaagttagtcctttaagtttcaaaagtttcaa 27893566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 502
Target Start/End: Original strand, 31263991 - 31264043
Alignment:
Q  450 cttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaa 502  Q
    |||||||||||| |||||||  ||| |||| ||||||||||| ||||||||||    
T  31263991 cttttagtttgacagaattctcaagttagtcctttaagtttcaaaagtttcaa 31264043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 504
Target Start/End: Original strand, 34429681 - 34429741
Alignment:
Q  444 ttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||| |||||||||||| |||||||  ||| |||| |||||| |||||||| ||||||||    
T  34429681 ttggtccttttagtttgacagaattctcaagttagtcctttaaatttcgaaaatttcaatt 34429741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0746 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0746
Description:

Target: scaffold0746; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 504
Target Start/End: Complemental strand, 658 - 598
Alignment:
Q  444 ttggtacttttagtttgatagaattcataagctagttctttaagtttcgaaagtttcaatt 504  Q
    ||||| |||||| ||||||||||||   ||| |||| |||||||||| |||||||||||||    
T  658 ttggtccttttaatttgatagaattttcaagttagtcctttaagttttgaaagtttcaatt 598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University