View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7994_low_6 (Length: 472)
Name: NF7994_low_6
Description: NF7994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7994_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 16 - 462
Target Start/End: Complemental strand, 51656696 - 51656251
Alignment:
| Q |
16 |
caaaaccttctataacctcatcacttgcttgttcccctcaatcaagttaacatctcaatcaagcttgctgtttctttgttattataacttcatttccttt |
115 |
Q |
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| T |
51656696 |
caaaaccttctataacctcatcacttgcttgttcccctcaatcaagttaacatctcaatcaagcttgctgtttctttgttattataact-catttccttt |
51656598 |
T |
|
| Q |
116 |
ggtgtttctcccacccaaatcctggcggcaatacgatgcgagaaaccctggttgaccgagttaaagtaaatgtaaatattgagaatcttataactcatcc |
215 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51656597 |
ggtgtttctcccacgcaaatcctggcggcaatacgatgcgagaaaccctggttgaccgagttaaagtaaatgtaaatattgagaatcttataactcatcc |
51656498 |
T |
|
| Q |
216 |
attaataggttctcatagtttagtagattctcatttctcattacttgtatgaatgtgtgagttattgttgatgttgaatctaaagatttaaaaataaata |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
51656497 |
attaataggttctcatagtttagtagattctcatttctcattacctgtatgaatgtgtgagttactgttgatgttgaatctaaagatttaaaaataaata |
51656398 |
T |
|
| Q |
316 |
aaatgatgaatgtgaaggctatataggttattattaacttttctaaaatgtgatattcatgaaagtatacatgtgtatgccggccacaacaacaaaaaat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51656397 |
aaatgatgaatgtgaaggctatataggttattattaacttttctaaaatgtgatattcatgaaagtatacatgtgtatgccggccacaacaacaaaaaat |
51656298 |
T |
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| Q |
416 |
attgacattaagtttaagatgtatgcatgcatgcgagcgtgtgtgcg |
462 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51656297 |
attgacattaagtttaagatgtatgcatgcatgcgagcgtgtgtgcg |
51656251 |
T |
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