View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7995_low_1 (Length: 425)
Name: NF7995_low_1
Description: NF7995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7995_low_1 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0161 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 28 - 425
Target Start/End: Original strand, 32463613 - 32464010
Alignment:
| Q |
28 |
gagtatctaccactaatgttacttcaggttggttacactcattactatttaaatgtgacgactcagtgcagtgcagagtgtactaaccagaacaaaaaac |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32463613 |
gagtatctaccactaatgttacttcaggttggttacactcattactatttaaatgtgacgactcaatgcagtgcagagtgtactaaccagaacaaaaaac |
32463712 |
T |
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| Q |
128 |
cattcatatacaatggaccagttaaccagaaaccaagcaaattcaacatctctaaccccactcaccttcttagacagagcagccactgtctatggcaact |
227 |
Q |
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| T |
32463713 |
cattcatatacaatggaccagttaaccagaaaccaagcaaattcaacagctctaaccccactcaccttcttagaaagagcagccactgtctatggcaact |
32463812 |
T |
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| Q |
228 |
ccatttccatcatatacaacaacacttcattcacttggtctcaaacccacaaaagatgtcttcaacttgcttcatcactttcttccctcggcatccaaaa |
327 |
Q |
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| T |
32463813 |
ccatttcaatcatatacaacaatacctcattcacttggtctcaaacccacaaaagatgtcttcaacttgcttcatcactttcttccctcggcatccaaaa |
32463912 |
T |
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| Q |
328 |
aggcgatgtcgtctccgtcctttcccccaacactccggccatgtatgagcttcatttctccgttccaatgtccgtcgccattctcaataacctcaact |
425 |
Q |
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| T |
32463913 |
aggcgacgtcgtctccgtcctttcccccaacactccggccatgtatgagcttcatttctccgttccaatgtccggcgccattctcaataacctcaact |
32464010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 133 - 425
Target Start/End: Complemental strand, 32457417 - 32457125
Alignment:
| Q |
133 |
atatacaatggaccagttaaccagaaaccaagcaaattcaacatctctaaccccactcaccttcttagacagagcagccactgtctatggcaactccatt |
232 |
Q |
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| T |
32457417 |
atatacaatgaaccagttaaccagaaaccaagcaaattcaacggctctaaccccactcaccttcttagaaagagcagccactgtctatggcaactccatt |
32457318 |
T |
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| Q |
233 |
tccatcatatacaacaacacttcattcacttggtctcaaacccacaaaagatgtcttcaacttgcttcatcactttcttccctcggcatccaaaaaggcg |
332 |
Q |
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| T |
32457317 |
tcaatcatatacaacaatacctcattcacttggtctcaaacccacaaaagatgtcttcaacttgcttcatcactttcttccctcggcatccaaaaaggcg |
32457218 |
T |
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| Q |
333 |
atgtcgtctccgtcctttcccccaacactccggccatgtatgagcttcatttctccgttccaatgtccgtcgccattctcaataacctcaact |
425 |
Q |
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| T |
32457217 |
atgtcgtctccgtcctttcccccaacactccggccatgtacgagcttcatttctccgttccaatgtccggcgccattctcaataacctcaact |
32457125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 130 - 422
Target Start/End: Original strand, 23139 - 23431
Alignment:
| Q |
130 |
ttcatatacaatggaccagttaaccagaaaccaagcaaattcaacatctctaaccccactcaccttcttagacagagcagccactgtctatggcaactcc |
229 |
Q |
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||||||||||||| ||||| ||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23139 |
ttcatatacaatgaaccagataaccagaaaccaagcaaactcgacacctctaaccccactcaccttcttagacagagcagctactgtctatggcaactcc |
23238 |
T |
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| Q |
230 |
atttccatcatatacaacaacacttcattcacttggtctcaaacccacaaaagatgtcttcaacttgcttcatcactttcttccctcggcatccaaaaag |
329 |
Q |
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|| || ||||||||||||| |||||||||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23239 |
atatcaatcatatacaacagcacttcattcacatggtttcaaacccataaacgatgtcttcaacttgcttcatcactttcttccctcggcatcgtaaaag |
23338 |
T |
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| Q |
330 |
gcgatgtcgtctccgtcctttcccccaacactccggccatgtatgagcttcatttctccgttccaatgtccgtcgccattctcaataacctca |
422 |
Q |
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|||| |||||||||||||| || |||||||||||||||||||| ||||| || ||||||||||||||||||| |||||||||||| ||||||| |
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| T |
23339 |
gcgacgtcgtctccgtcctctctcccaacactccggccatgtacgagctacaattctccgttccaatgtccggcgccattctcaacaacctca |
23431 |
T |
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