View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7995_low_2 (Length: 338)
Name: NF7995_low_2
Description: NF7995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7995_low_2 |
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| [»] scaffold0161 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 32456846 - 32457020
Alignment:
| Q |
20 |
gatcccactctgagtcaggtcgaatccatttgaaatatggatcaccctttgctgcaagaccctcataggtgttgataatgtttacgttttttggaagtgg |
119 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32456846 |
gatcccactctgagtcaggtcggatccatttgaaatatggatcaccctttgctacaagaccctcataggtgttgataatgtttacgttttttggaagtgg |
32456945 |
T |
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| Q |
120 |
aggaatctggtgcggtgctagggtttcatccattatgaggacgagcttaggttgttggatgtttgttgggaataa |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32456946 |
aggaatctggtgcggtgctagggtttcatccattatgaggacgagcttaggttgttggatgtttgttgggaataa |
32457020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 32464289 - 32464115
Alignment:
| Q |
20 |
gatcccactctgagtcaggtcgaatccatttgaaatatggatcaccctttgctgcaagaccctcataggtgttgataatgtttacgttttttggaagtgg |
119 |
Q |
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||||||||||||||| |||| ||||||||||||||| ||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32464289 |
gatcccactctgagttaggttgaatccatttgaaatttggatcaccttttgttacaagaccctcataggtgttgataatgtttacgttttttggaagtgg |
32464190 |
T |
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| Q |
120 |
aggaatctggtgcggtgctagggtttcatccattatgaggacgagcttaggttgttggatgtttgttgggaataa |
194 |
Q |
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| T |
32464189 |
aggaatctggtttggtgctagggtttcatccatgatgaggacgagcttaggttgttggatgtttgttgggaataa |
32464115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 229 - 334
Target Start/End: Original strand, 32457055 - 32457160
Alignment:
| Q |
229 |
atgtcaacaaaaatgagttttgattcactgtggatgagaagaacggagagggttttgtggtcaagtcggaagttgaggttattgagaatggcgccggaca |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32457055 |
atgtcaacaaaaatgagttttgattcactgtggatgagaagaacggagagggttttgtggtcaagtcggaagttgaggttattgagaatggcgccggaca |
32457154 |
T |
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| Q |
329 |
ttggaa |
334 |
Q |
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|||||| |
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| T |
32457155 |
ttggaa |
32457160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 229 - 334
Target Start/End: Complemental strand, 32464080 - 32463975
Alignment:
| Q |
229 |
atgtcaacaaaaatgagttttgattcactgtggatgagaagaacggagagggttttgtggtcaagtcggaagttgaggttattgagaatggcgccggaca |
328 |
Q |
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||||||||||| |||||||| |||||||| |||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32464080 |
atgtcaacaaagatgagtttcgattcactatggatgaggagaacagagaggcttttgtggtcgagtcggaagttgaggttattgagaatggcgccggaca |
32463981 |
T |
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| Q |
329 |
ttggaa |
334 |
Q |
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|||||| |
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| T |
32463980 |
ttggaa |
32463975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 229 - 334
Target Start/End: Complemental strand, 23504 - 23399
Alignment:
| Q |
229 |
atgtcaacaaaaatgagttttgattcactgtggatgagaagaacggagagggttttgtggtcaagtcggaagttgaggttattgagaatggcgccggaca |
328 |
Q |
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||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
23504 |
atgtcaacaaagatgagtttcgattcactgtggatgagcagcgcggagagggttttgtagtcaagtcggaagctgaggttgttgagaatggcgccggaca |
23405 |
T |
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| Q |
329 |
ttggaa |
334 |
Q |
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|||||| |
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| T |
23404 |
ttggaa |
23399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 23719 - 23563
Alignment:
| Q |
20 |
gatcccactctgagtcaggtcgaatccatttgaaatatggatcaccctttgctgcaagaccctcatag------gtgttgataatgtttacgttttttgg |
113 |
Q |
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|||||||||| | ||| || || ||||||||||||| |||||||||||||||| |||||| ||| ||| ||||| |||||||||| ||||||||| |
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| T |
23719 |
gatcccactcggtgtcgggacggatccatttgaaatttggatcaccctttgctacaagactctcgtagtcgtaggtgttcataatgtttatgttttttgg |
23620 |
T |
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| Q |
114 |
aagtggaggaatctggtgcggtgctagggtttcatccattatgaggacgagcttagg |
170 |
Q |
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||||| |||||||||| ||| || ||||||||||| ||||||||||||||||| |
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| T |
23619 |
aagtgatggaatctggtccggcaataacgtttcatccatgatgaggacgagcttagg |
23563 |
T |
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