View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7996_high_1 (Length: 651)
Name: NF7996_high_1
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7996_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 77 - 633
Target Start/End: Original strand, 38633748 - 38634302
Alignment:
| Q |
77 |
gttcatgtttaaagttatgaatagaagttacaaaaaatggaaagagaaggtaaattgtgcaatcacaccatagacaaataaaccaacacaagaatttgca |
176 |
Q |
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| T |
38633748 |
gttcatgtttaaagttatgaatagaagttacaaaaaatggaaagagaaggtaaagtgtgcaatcacaccatagacaaataaaccaacacaagaatttgca |
38633847 |
T |
|
| Q |
177 |
aatattaaaattccattcaatcatataactacaaaaagaatcaacctgtgaggcaggggtcatgattctctaagattgttccaaactttgtaacacactt |
276 |
Q |
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| T |
38633848 |
aatattaaaattccattcaatcatataactacaaaaagaatcaacctgtgaggcaggg-tcatgattctctaagattgttccaaactttgtaacacactt |
38633946 |
T |
|
| Q |
277 |
nnnnnnnncagcaaaatggatcatgataataatgatcactcctaaatgaaaccaggcataagtttcaaaagtcaatagctaaatcattgtattaccgata |
376 |
Q |
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| T |
38633947 |
aaaaaaaacagcaaaatggatcatgataataatgatcactcctaaatgaaaccaggcataagtttcaaaagtcaatagctaaatcattgtat-accgata |
38634045 |
T |
|
| Q |
377 |
tagtagatacaatcatccaaaagacaaccctaaactagaatctaatcaagattctgaagacaaatttttggctggagtcataagagcaacagcacaacga |
476 |
Q |
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| T |
38634046 |
tagtagatacaatcatccaaaagacaaccctaaactagaatctaatcaagattctgaagacaaatttttggctggagtcataagagcaacagcacaacga |
38634145 |
T |
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| Q |
477 |
tcagagctacagaacttcttgtaaattgcccttagcctactctctggagcagcagaatgaaagctcaccatgagtttggcacaatccctgacaacataaa |
576 |
Q |
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| T |
38634146 |
tcagagctacagaacttcttgtaaattgcccttagcctactctctggagcagcagaatgaaagctcgccatgagtttggcacaatccctgacaacataaa |
38634245 |
T |
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| Q |
577 |
taaacaaaatgttactttctttgacacaaaacaatcgcataaaacaaacattcagtt |
633 |
Q |
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| T |
38634246 |
taaacaaaatgttactttctttgacacaaaacaatcgcataaaacaaacattcagtt |
38634302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 38633612 - 38633745
Alignment:
| Q |
3 |
gacaaaattatcgctgtttgcttgttgaaaaatttgataataaaatacagttagactataaaagtg------nnnnnnnngttcatgtttaaagttatga |
96 |
Q |
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| T |
38633612 |
gacaaaattatcgctgtttgcttgttgaaaaatttgataataaaatacagttagattataaaagtgttttttttttttttgttcatgtttaaagttatga |
38633711 |
T |
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| Q |
97 |
atagaagttacaaaaaatggaaagagaaggtaaa |
130 |
Q |
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| T |
38633712 |
atagaagttacaaaaaatggaaagagaaggtaaa |
38633745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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