View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7996_high_12 (Length: 353)
Name: NF7996_high_12
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7996_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 32935067 - 32934730
Alignment:
| Q |
1 |
agaaagtagagagggcactcggtgttacataatacatacctccaccaccattcatgatcctcagcagcaagttgaaagtatgtcaatgccacattaccaa |
100 |
Q |
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| T |
32935067 |
agaaagtagagagggcactcggtgttacataatacatacctccaccaccattcatgatcctcagcagcaagttgaaagtatgtcaatgccacattaccaa |
32934968 |
T |
|
| Q |
101 |
aagcagtgacaatcaaaagaatgatgaaaacaatgaacaaaatgctgtatatggtataaatctgatgaccccacacactagcaaatatgtagtagagttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32934967 |
aagcagtgacaatcaaaagaatgatgaaaacaatgaacaaaatgctgtatatggtataaatctgatgaccccacacactagcaaatatgtagtagagttc |
32934868 |
T |
|
| Q |
201 |
aatgaaaatggcactgaatggcaaaaatccagccatagccatttgagcaagagttttacggtaccaaggtagtttaggaatctccctcggatacttgttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32934867 |
aatgaaaatggcactgaatggcaaaaatccagccatagccatttgagcaagagttttacggtaccaaggtagtttaggaatctccctcggatacttgttg |
32934768 |
T |
|
| Q |
301 |
gttcgacaaggcgcttgaaattctgattggctattctt |
338 |
Q |
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| T |
32934767 |
gttcgacaaggcgcttgaaattctgattggctgttctt |
32934730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 35 - 247
Target Start/End: Complemental strand, 27760057 - 27759845
Alignment:
| Q |
35 |
catacctccaccaccattcatgatcctcagcagcaagttgaaagtatgtcaatgccacattaccaaaagcagtgacaatcaaaagaatgatgaaaacaat |
134 |
Q |
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||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| || |||||||| |||||||| ||||||||||| ||||| |
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| T |
27760057 |
catacctccaccaccattcatgatcttcagcagcaagctggaagtatgtcaatgccacagtaatgaaagcagtaacaatcaagagaatgatgaagacaat |
27759958 |
T |
|
| Q |
135 |
gaacaaaatgctgtatatggtataaa-tctgatgaccccacacactagcaaatatgtagtagagttcaatgaaaatggcactgaatggcaaaaatccagc |
233 |
Q |
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|||| ||||||||| || || |||| |||| || ||||| ||||| |||||||| || || ||||| ||| |||| |||||||| ||||||||||| || |
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| T |
27759957 |
aaacagaatgctgtagattgtgtaaattctg-tggccccagacactggcaaatatataataaagttcgatgtaaatagcactgaaaggcaaaaatcctgc |
27759859 |
T |
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| Q |
234 |
catagccatttgag |
247 |
Q |
| |
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||| ||||| |||| |
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| T |
27759858 |
cattgccatctgag |
27759845 |
T |
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