View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7996_high_15 (Length: 291)
Name: NF7996_high_15
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7996_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 42607762 - 42607503
Alignment:
| Q |
18 |
atgttcctcgttccattctcccatcaaaacccaacaccaaaatcctcaccaactccacgctcactatctcaaatctaaccttctccacaatccacattac |
117 |
Q |
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| T |
42607762 |
atgttcctcgttccattttcccatcaaaacccaacaccaaaatcctcaccaactccacgctcactatctcaaatctaaccttctccacaatccacattac |
42607663 |
T |
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| Q |
118 |
tcttcacacctcctccctctctacatcacacataccaaaaaccctcagccacattcacaccttcttcaactcaatcccacaccccactttacttcattgg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42607662 |
tcttcacacctcctccctctctacatcacacataccaaaaa-cctcagccacattcacaccttcttcaactcaatcccacaccccactttacttcattcg |
42607564 |
T |
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| Q |
218 |
aacttaatcatcacctcttacatcgaccacaaccgttcaaacgacgcacttctcctctttc |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42607563 |
aacttaatcatcacctcttacatcgaccacaaccgttcaaacgacgcacttctcctctttc |
42607503 |
T |
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