View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7996_high_2 (Length: 535)
Name: NF7996_high_2
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7996_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Original strand, 34466096 - 34466600
Alignment:
| Q |
18 |
cttctctttctccttcttcttccccggttgtcacagttgctgttgctgctacaagctcacgttccttcaacgtttttcactatgataaatttggtagtaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34466096 |
cttctctttctccttcttcttccccggttgtcacagttgctgttgctgctacaagctcacgttccttcaacgtttttcactatgataaatttggtagtaa |
34466195 |
T |
|
| Q |
118 |
aagctttacttcaagaactgcttcataccctctttcctactctctctcacgttctccttcacttaatcttagccctattgaaagtgtgcaatcttttcct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34466196 |
aagctttacttcaagaactgcttcataccctctttcctactctctctcacgttctccttcacttaatcttagccctattgaaagtgtgcaatcttttcct |
34466295 |
T |
|
| Q |
218 |
cctataaaccctgtttcaccatctttttcttctgaatcttgttctcctatgccgatggaagattttggtttgaaatgggatggtaatgatactcaggtga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34466296 |
cctataaaccctgtttcaccatctttttcttctgaatcttgttctcctatgccgatggaagattttggtttgaaatgggatggtaatgatactcaggtga |
34466395 |
T |
|
| Q |
318 |
gtaaaatggctcctcctgttccgccgccactgccgccgaggttatgggagactccggtggtggtttctcaagatggtaatggtgatgttagtgttgagaa |
417 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34466396 |
gtaaaatggctcctcctgttcccccgccgctgccgccgaggttatgggagactccggtggtggtttctcaagatggtaatggtgatgttagtgttgagaa |
34466495 |
T |
|
| Q |
418 |
tgaagaaaatttgaagccaaagttgaaggctttgcattgggataaagttaaggctagctcagatagggccatggtttgggatcaactgagaccaagttct |
517 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34466496 |
tgaagaaaatttaaagccaaagttgaaggctttgcattgggataaagttaaggctagctcagatagggccatggtttgggatcaactgagaccaagttct |
34466595 |
T |
|
| Q |
518 |
tttca |
522 |
Q |
| |
|
||||| |
|
|
| T |
34466596 |
tttca |
34466600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 501
Target Start/End: Complemental strand, 10326188 - 10326121
Alignment:
| Q |
434 |
ccaaagttgaaggctttgcattgggataaagttaaggctagctcagatagggccatggtttgggatca |
501 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| | |||||| || ||| | | |||||||||||||| |
|
|
| T |
10326188 |
ccaaagttgaagcctttgcattgggataaagtgagggctagttccgatcgtgaaatggtttgggatca |
10326121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University