View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7996_high_21 (Length: 258)
Name: NF7996_high_21
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7996_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 14177523 - 14177423
Alignment:
| Q |
4 |
tgttattttgagttgatgatatagccaaaattctcacgttgaacagaaagagtagttgcaaacttgcaaaagttatgacacttactgtttggttggtatc |
103 |
Q |
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| T |
14177523 |
tgttattttgagttgatgatatagccaaaattctcacgttgaacagaaagagttgttgcaaacttgcaaaagttatgacacttactgtttggttggtatc |
14177424 |
T |
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| Q |
104 |
a |
104 |
Q |
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| T |
14177423 |
a |
14177423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 14177351 - 14177283
Alignment:
| Q |
176 |
tttgagatttgttttgaaaccacagtgaataagaatctc--tgtacaacattcattaccatgtgccaac |
242 |
Q |
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| T |
14177351 |
tttgagatttgttttgaaaccacagtgaataagaatctctgtgtacaacattcattaccatgtgccaac |
14177283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 19487360 - 19487425
Alignment:
| Q |
179 |
gagatttgttttgaaaccacagtgaataagaatctctg--tacaacattcattaccatgtgccaac |
242 |
Q |
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| T |
19487360 |
gagatttgttttgaaaccacaatgaataagaatccctgtatacaacaatcattgtcatgtgccaac |
19487425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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