View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7996_high_3 (Length: 471)
Name: NF7996_high_3
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7996_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 6496084 - 6496535
Alignment:
| Q |
1 |
gatattagtcttggtgtttgatgaagcactttttgatggagaaggagttttggtgattgagttttctggtatcctcaatgagcatcttagaggattctat |
100 |
Q |
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| T |
6496084 |
gatattagtcttggtgtttgacgaagcactttttgatggagaaggagttttggtgattgagttttctggtatcctcaatgagcatcttagaggattctat |
6496183 |
T |
|
| Q |
101 |
agatggtatacttcctttttccctttactatgttacatcaaaacaccttattataacgaaaatatgcggctacaattgcagttgtgataccaatgtaaag |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
6496184 |
agatggta--cttcctttttccctttactatgttacattgaa-caccttattataacgtaaatatgcggctacaattgcagttgtgataccgatgtaaag |
6496280 |
T |
|
| Q |
201 |
acctctaaaacttttatgtcgcagctgcgataccgttgtaaaccttnnnnnnncttgcttgatgaattaaacgactctcacttgatgcctttagagtcaa |
300 |
Q |
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| T |
6496281 |
acctctaaaacttttatgtcgcagctgcgataccgttgtaaaccttaaaaaaacttgcttgatgaattaaacgactctcacttgatgcctttagagtcaa |
6496380 |
T |
|
| Q |
301 |
tcaaacttgtgtattgatttgaacagcacttatgttgatggagaagtgaagaaaaatatggccacaacacagtttgaggcagtagatgcaagaagatgtt |
400 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6496381 |
tcaaacttgtgcattaatttgaacagcacttatgttgatggagaagtgaagaaaaatatggccacaacacagtttgaggcagtagatgcaagaagatgtt |
6496480 |
T |
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| Q |
401 |
ttccatgctgggatgaacctgctctaaaggtatgtgtgtagaattctattcttat |
455 |
Q |
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| T |
6496481 |
ttccatgctgggatgaacctgctctaaaggtatgtgtgtagaattctattcttat |
6496535 |
T |
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