View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7996_high_5 (Length: 451)
Name: NF7996_high_5
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7996_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 110 - 366
Target Start/End: Complemental strand, 11326396 - 11326140
Alignment:
| Q |
110 |
gtacagatcctttatacaattgaggcctatgaagcaccagcactggcatatatacggacacccgaagatgccctaacacgtagacatcgataataatttt |
209 |
Q |
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| T |
11326396 |
gtacagatcctttatacaattgaggcctatgaagcaccagcactggcatatatacggacacccgaagatgcactaacacgtagacatcgataataatttt |
11326297 |
T |
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| Q |
210 |
nnnnnnnntgatgtaaagtggggtttcatggatttaacataagacatatcgttgatataaccaaccatatttaaaagtggagtaaaaatatgaaacctta |
309 |
Q |
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| T |
11326296 |
taaaaaaatgaagtaaagtggggtttcatggatttaacataagacatatcgttgatataaccaaccatatttaaaagtggagtaaaaatatgaaacctta |
11326197 |
T |
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| Q |
310 |
aacacagatcttctggcggagaaatcattggtaacaggaacagtaacagccatctgc |
366 |
Q |
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| T |
11326196 |
aacacagatcttctggcggagaaatcattgctaacaggaacagtaacagccatctgc |
11326140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 11326483 - 11326439
Alignment:
| Q |
23 |
acccatcaattacaataacagttccttcaaagtttctcaagagcc |
67 |
Q |
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| T |
11326483 |
acccatcaattacaataacagttccttcaaagtttctcaagagcc |
11326439 |
T |
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