View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7996_high_8 (Length: 391)
Name: NF7996_high_8
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7996_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 30091153 - 30091514
Alignment:
| Q |
1 |
tgcgttttgcgtacttgatcacagattctgcatcttttgccttgataacaatacctggagcgtagatatgtcttaaatcaattaattcaggactatcaga |
100 |
Q |
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| T |
30091153 |
tgcgttttgcgtacttgatcacagattctgcatcttttgtcttgataacaatacctggagcgtagatatgtcttaaatcaattaattcaggactatcaga |
30091252 |
T |
|
| Q |
101 |
gagaaacactgcccctaacacattagtttgtgtaacaacatcgatttgatcaaacactgagattgagtttgatattgagtcacaaataattatgacttgc |
200 |
Q |
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| T |
30091253 |
gagaaacactgcccctaacatattggtttgtgtaacaacatcgatttgatcaaacactgagcttgagtttgatattgagtcacaaataattatgacttgc |
30091352 |
T |
|
| Q |
201 |
ttgttaacttgagataaacgcttcactgaattgcatgaagataaagtgttatcgtaaacaagaggaagattttcgactctagttgaatttgatgcaaaca |
300 |
Q |
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| T |
30091353 |
ttgttaacttgagataaacgcttcactgaattgcatgaagataaagtgttatcgtaaacaagaggaagattttcgactatagttgaatttgatgcaaaca |
30091452 |
T |
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| Q |
301 |
aagtccaaccaataatgttttgaccattccccaaaacaaggctgccaaaagttctatctatg |
362 |
Q |
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| T |
30091453 |
aagtccaaccaataatgttttgaccattccccaaaacaaggctgccaaaagttctatctatg |
30091514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 6 - 361
Target Start/End: Complemental strand, 30099761 - 30099400
Alignment:
| Q |
6 |
tttgcgtacttgatcacagattctgcatcttttgccttgataacaatacctggagcgtagatatgtcttaaatcaattaattcaggactatcagagagaa |
105 |
Q |
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||||| || ||||||||||||| ||||||||||| |||||| ||||||| ||||| ||||||| ||| |||||| ||||| | |||||||||||||| || |
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| T |
30099761 |
tttgcataattgatcacagattgtgcatcttttggcttgattacaatacttggagtgtagatacgtcctaaatcgattaactgaggactatcagagacaa |
30099662 |
T |
|
| Q |
106 |
acactgcccctaacacattagtttgtgtaacaacatcgatttgatcaaacactga------gattgagtttgatattgag---tcacaaataattatgac |
196 |
Q |
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||||||||||||||| ||| | || ||||||||||| |||||| | ||||||||| | || |||||| | |||| ||||| | ||| || || |
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| T |
30099661 |
acactgcccctaacagattggcttctgtaacaacattgatttggttaaacactgaggttttgtttctgtttgacaatgagtcatcacagagaataatcac |
30099562 |
T |
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| Q |
197 |
ttgcttgttaacttgagataaacgcttcactgaattgcatgaagataaagtgttatcgtaaacaagaggaagattttcgactctagttgaatttgatgca |
296 |
Q |
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|| ||||||| ||||||||| |||| ||| |||||||||||||||||||||| ||||||||| ||| |||||| ||| || | ||||| || | |
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| T |
30099561 |
ttttttgttaagttgagataacaagttcaatgagttgcatgaagataaagtgttattgtaaacaagtagaacattttcaactata---gcatttgctgga |
30099465 |
T |
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| Q |
297 |
aacaaagtccaaccaataatgttttgaccattccccaaaacaaggctgccaaaagttctatctat |
361 |
Q |
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| T |
30099464 |
aacaaagtccaaccaataatgctttgaccatttcccaaaacaagagtgccaaaagttctatctat |
30099400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 305 - 359
Target Start/End: Original strand, 30087477 - 30087531
Alignment:
| Q |
305 |
ccaaccaataatgttttgaccattccccaaaacaaggctgccaaaagttctatct |
359 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
30087477 |
ccaaccaataatgttttcaccatttcccaaaacaaggctgccaaaagttctatct |
30087531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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