View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7996_low_10 (Length: 401)
Name: NF7996_low_10
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7996_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 24256369 - 24256675
Alignment:
| Q |
1 |
ggggagaggcgtggaggtggaggataagactttttgtgtgggaggaggagactcttcgagaacgtgtttctctgttatataactttcttttgtagattaa |
100 |
Q |
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| T |
24256369 |
ggggagaggcgtggaggtggaggagaagactttttgcgtgggaggaggagactcttcgagaacgtgtttctctgttacataactttcttttgtagattaa |
24256468 |
T |
|
| Q |
101 |
tgcttttgacaggtggtgttggcttctagactctattaagggctactctgtcagtggggcttatcattacctcacagatgcagacgctcctagtgacaag |
200 |
Q |
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| T |
24256469 |
tgcttttgacaggtggtgttggcttctagactctgttaagggcgactctgttagtgggacttatcattacctcacagatgcagacgctcctagtgacaag |
24256568 |
T |
|
| Q |
201 |
ggttcaattgataacatctggcacaaacaggttccgcttctcttggttcgcacggcggcttctacgcaacaggttaccaactagagataatcttgtgcgg |
300 |
Q |
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| T |
24256569 |
gattcaattgataacatctggcacaaacaggtcccgcttctcttggttcgcatggtggcttctgcgcaacaggttaccaactagagataatcttgtgcgg |
24256668 |
T |
|
| Q |
301 |
cagaggg |
307 |
Q |
| |
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| T |
24256669 |
cggaggg |
24256675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 239 - 375
Target Start/End: Original strand, 7566674 - 7566810
Alignment:
| Q |
239 |
tctcttggttcgcacggcggcttctacgcaacaggttaccaactagagataatcttgtgcggcagagggttcttcaagacgtcagtaatgtttgtgttgg |
338 |
Q |
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| T |
7566674 |
tctctttgttcgcttggcggcttctgagaaacaagttaccaactagagataattttatgaggcagggggttcttcaagacggcaacaatggttgtgttgg |
7566773 |
T |
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| Q |
339 |
agggtgcgagctcccggaaaaggaggtgcatatgttc |
375 |
Q |
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| T |
7566774 |
aggatgcggtctcccggaaactgcggtgcatctgttc |
7566810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 4 - 344
Target Start/End: Complemental strand, 7573547 - 7573202
Alignment:
| Q |
4 |
gagaggcgtggaggtggaggataagactttttgtgtgggaggaggagactcttcgagaacgtgtttctctgttatataactttcttttgtagattaatgc |
103 |
Q |
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||||||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||||| |||||||| |||| |||||| |||| |
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| T |
7573547 |
gagaggcgtggaggtggaggaggagacttttcgcatgggaggaggagactgttcgagaacgtgtttctctgttacataactttgttttatagattgatgc |
7573448 |
T |
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| Q |
104 |
ttttgacaggtggtgttggcttctagactctattaagggctactctgtcagtggggcttatcattacctcacagatgcagacgctcctagtgacaagggt |
203 |
Q |
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| T |
7573447 |
tcttgacatgtggcgctgacttcttgatcctgttaaaggctattatgtcagtggggcatatcattacgtcacaactgcataagctcccattgacagggat |
7573348 |
T |
|
| Q |
204 |
tcaattgataacatctggcacaaacaggttccgct-----tctcttggttcgcacggcggcttctacgcaacaggttaccaactagagataatcttgtgc |
298 |
Q |
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|| || ||||| || ||||||||||| ||| |||| |||||| |||||| || |||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
7573347 |
tcgatagataatatttggcacaaacaagtttcgctaaaggtctctttgttcgcttggtggcttctacgcagcaggttatcaactagagataatcttgtgc |
7573248 |
T |
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| Q |
299 |
ggcagagggttcttcaagacgtcagtaatgtttgtgttggagggtg |
344 |
Q |
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|||||| |||||||||||||| || ||| ||||||||||||||||| |
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| T |
7573247 |
ggcagatggttcttcaagacggcaataacgtttgtgttggagggtg |
7573202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 3903868 - 3903519
Alignment:
| Q |
1 |
ggggagaggcgtggaggtggaggataagactttttgtgtgggaggaggagactcttcgagaacgtgtttctctgttatataactttcttttgtagattaa |
100 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| |||||||||||||| | |||||||| |||||| ||| ||| ||||| | ||||| ||||| | |
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| T |
3903868 |
ggggagaggcgtggaggtggaggatgagactttttgcgtgggaggaggagaatgttcgagaatgtgtttttctattacataacactgttttgcagattga |
3903769 |
T |
|
| Q |
101 |
tgcttttgacaggtggtgttggcttctagactctattaagggctactctgtcagtggggcttatcattacctcacagatgcagacgctcctagtgacaag |
200 |
Q |
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| || ||||||||||| ||| |||||| ||| | |||| ||||| |||||||||||| | ||||| | ||| |||| |||| | ||| ||| ||||| | |
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| T |
3903768 |
tactcttgacaggtggcgtttgcttcttgaccgtgttaatggctattctgtcagtgggacgtatcacttcctaacagctgcataagct-ctattgacagg |
3903670 |
T |
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| Q |
201 |
ggttcaattgataacatctggcacaaacaggttccgct-----tctcttggttcgcacggcggcttctacgcaacaggttaccaactagagataatcttg |
295 |
Q |
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| T |
3903669 |
gattcaattgataacattgagcataaacaggtttggttaaaggtttctctgtttgcttggcgtcttctgcacaacatgttaccaactagagatgatctcg |
3903570 |
T |
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| Q |
296 |
tgcggcagagggttcttcaagacgtcagtaatgtttgtgttggagggtgcg |
346 |
Q |
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||||||||||||||||||| |||| | || ||||||||||||||| |||| |
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| T |
3903569 |
tgcggcagagggttcttcaggacgacgatattgtttgtgttggaggttgcg |
3903519 |
T |
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