View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7996_low_11 (Length: 397)
Name: NF7996_low_11
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7996_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 112 - 385
Target Start/End: Original strand, 2607335 - 2607606
Alignment:
| Q |
112 |
cataaatatcaatatcacacacttttttacaatattttcagtgctgctgttaattctgatacacacgaggaagttgccatcaagaagattgccaatacat |
211 |
Q |
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| T |
2607335 |
cataaatatcaatatcacacacttttttacaatattttcagtgctgctgttaattctgatacacatgaggaagttgccatcaagaagattgccaatacat |
2607434 |
T |
|
| Q |
212 |
ttgacaacattattgatgctaaaaggactttgagggaaattaagcttcttcgtcacatggaccatgaaaatgtactattctaactt-caaggnnnnnnnn |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2607435 |
ttgacaacattattgatgctaaaaggactttgagggaaattaagcttcttcgtcacatggaccatgaaaatgtactattctaacttccaaggttttttta |
2607534 |
T |
|
| Q |
311 |
ngttttgttattattatgctataataaggtcctgatgatgaaaattattcacagattattgctattaaggatatt |
385 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2607535 |
---ttttttattattatgctataataaggtcctgatgatgaaaattattcacagattattgctattaaggatatt |
2607606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 41337980 - 41337854
Alignment:
| Q |
146 |
ttttcagtgctgctgttaattctgatacacacgaggaagttgccatcaagaagattgccaatacatttgacaacattattgatgctaaaaggactttgag |
245 |
Q |
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|||| |||||||||||||||||||||||||| || ||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||||||||| |
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| T |
41337980 |
tttttagtgctgctgttaattctgatacacatgaacaagttgccatcaagaagattggtaatgcatttgacaatataattgatgctaaaaggactttgag |
41337881 |
T |
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| Q |
246 |
ggaaattaagcttcttcgtcacatgga |
272 |
Q |
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| T |
41337880 |
agaaatcaagctccttcgtcacatgga |
41337854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 148 - 285
Target Start/End: Original strand, 11057577 - 11057714
Alignment:
| Q |
148 |
ttcagtgctgctgttaattctgatacacacgaggaagttgccatcaagaagattgccaatacatttgacaacattattgatgctaaaaggactttgaggg |
247 |
Q |
| |
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|||||||||||||| ||| |||| |||| ||||||||| ||||| |||||||||| |||| |||||||||||| || |||||||||||||| || ||| |
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| T |
11057577 |
ttcagtgctgctgtaaatgctgagacacgcgaggaagtcgccattaagaagattggcaatgcatttgacaacagaatagatgctaaaaggaccttacggg |
11057676 |
T |
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| Q |
248 |
aaattaagcttcttcgtcacatggaccatgaaaatgta |
285 |
Q |
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|||| || |||||||| || ||||| |||||||||||| |
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| T |
11057677 |
aaataaaacttcttcgccatatggatcatgaaaatgta |
11057714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 148 - 285
Target Start/End: Complemental strand, 29767925 - 29767788
Alignment:
| Q |
148 |
ttcagtgctgctgttaattctgatacacacgaggaagttgccatcaagaagattgccaatacatttgacaacattattgatgctaaaaggactttgaggg |
247 |
Q |
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|||||||||||||| ||| | || |||| || ||||||||||| |||||| ||| |||| |||||||||||| ||||||||||||||||| || | | |
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| T |
29767925 |
ttcagtgctgctgtaaatgcggagacacgggaagaagttgccattaagaaggttggcaatgcatttgacaacagaattgatgctaaaaggaccttacgag |
29767826 |
T |
|
| Q |
248 |
aaattaagcttcttcgtcacatggaccatgaaaatgta |
285 |
Q |
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||||||| |||| || |||||||| |||||||||||| |
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| T |
29767825 |
aaattaaacttcagcggcacatggatcatgaaaatgta |
29767788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 281
Target Start/End: Original strand, 34415911 - 34415999
Alignment:
| Q |
193 |
aagaagattgccaatacatttgacaacattattgatgctaaaaggactttgagggaaattaagcttcttcgtcacatggaccatgaaaa |
281 |
Q |
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||||||||||| ||| |||||||||||| ||||||||||| |||||| | | ||||| ||||| ||||| || ||||| |||||||| |
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| T |
34415911 |
aagaagattgcaaatgcatttgacaacaagattgatgctaagaggactctccgtgaaatcaagctgcttcgccatatggatcatgaaaa |
34415999 |
T |
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