View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7996_low_13 (Length: 385)
Name: NF7996_low_13
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7996_low_13 |
 | |
|
| [»] chr1 (11 HSPs) |
| |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
| [»] scaffold0289 (2 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 385
Target Start/End: Original strand, 15011731 - 15012093
Alignment:
| Q |
18 |
gacaacattttgaaggacaatgaacaagctggtgaatttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15011731 |
gacaacattttgaaggacaatgaacaagctggtgaatttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatc |
15011830 |
T |
|
| Q |
118 |
atgactgctcgcctcctattgttcatcgtgatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15011831 |
atgactgctcgcctcctattgttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaa |
15011930 |
T |
|
| Q |
218 |
gtttctaaatcccaattcgtccaatatgacttcttttgcaggcacctttggatatgctgctccaggtcaattccttttcattcnnnnnnnnnnnnnatat |
317 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
15011931 |
gtttctaaatcccaattcatccaatatgacttcttttgcaggcacctttggatatgccgctccaggtcaattccttttcattc-----ttttttttatat |
15012025 |
T |
|
| Q |
318 |
taattaaggctataatatttgtagtttatcagtagtagttacatgtaaaatcgagttataacacaatt |
385 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15012026 |
taattaaggttataatatttgtagtttatctttagtagttacatgtaaaatagagttataacacaatt |
15012093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 385
Target Start/End: Original strand, 15002838 - 15003205
Alignment:
| Q |
18 |
gacaacattttgaaggacaatgaacaagctggtgaatttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||| |||| ||||||||||| |
|
|
| T |
15002838 |
gacaacattttgaaggacaatgaacaagctggcgaatttgattggaataagagggtgaatatcattaaagatgtagctaatgctttatgctatctgcatc |
15002937 |
T |
|
| Q |
118 |
atgactgctcgcctcctattgttcatcgtgatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaa |
217 |
Q |
| |
|
|||| || || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15002938 |
atgattgttcccctcctattgttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagattttggaacatctaa |
15003037 |
T |
|
| Q |
218 |
gtttctaaatcccaattcgtccaatatgacttcttttgcaggcacctttggatatgctgctccaggtcaattccttttcattcnnnnnnnnnnnnnatat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15003038 |
gtttctaaatcccaattcgtccaatatgacttcttttgcaggcacctttggatatgctgctccaggtcaattccttttcattctttttttttttttatat |
15003137 |
T |
|
| Q |
318 |
taattaaggctataatatttgtagtttatcagtagtagttacatgtaaaatcgagttataacacaatt |
385 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15003138 |
taattaaggttataatatttgtagtttatctttagtagttacatgtaaaatagagttataacacaatt |
15003205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 14522005 - 14521728
Alignment:
| Q |
18 |
gacaacattttgaaggacaatgaacaagctggtgaatttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
14522005 |
gacaacattttgaaggacaatgaacaagctagtgaatttgattggagtaggagggtgaatatcattaaagatatagctaatgctttattctatctacatc |
14521906 |
T |
|
| Q |
118 |
atgactgctcgcctcctattgttcatcgtgatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaa |
217 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14521905 |
atgactgctcacctcctattgttcatcgagatatatccagcaagaatgttattttggatttggaatgtgtagctcatgtctcagactttggaacatctaa |
14521806 |
T |
|
| Q |
218 |
gtttctaaatcccaattcgtccaatatgacttcttttgcaggcacctttggatatgctgctccaggtcaattcctttt |
295 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14521805 |
gtttctaaatcccaattcatcgaatatgacttcttttgcaggcacctttggatatgctgctccaggtcaactcctttt |
14521728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 15017846 - 15018123
Alignment:
| Q |
18 |
gacaacattttgaaggacaatgaacaagctggtgaatttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatc |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15017846 |
gacatcattttgaaggacaatgaacaagctgctgaatttgattggaataagagggtgaatattattaaagatatagctaatgccttatgctatctgcatc |
15017945 |
T |
|
| Q |
118 |
atgactgctcgcctcctattgttcatcgtgatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaa |
217 |
Q |
| |
|
|||| || || |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15017946 |
atgattgttcccctcctatagttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagattttggaacatctaa |
15018045 |
T |
|
| Q |
218 |
gtttctaaatcccaattcgtccaatatgacttcttttgcaggcacctttggatatgctgctccaggtcaattcctttt |
295 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
15018046 |
gtttctaaatcccaattcatccaatatgacttcttttgcaggcacctttggatatgctgctccaggtcagtccctttt |
15018123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 15037750 - 15038023
Alignment:
| Q |
18 |
gacaacattttgaaggacaatgaacaagctggtgaatttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||| ||||||||||| |
|
|
| T |
15037750 |
gacaacattttgaaggacaatgaacaagctggtgaatttgattggaataagagagtgaatatcattaaggatatagctaatgctttatgctatctgcatc |
15037849 |
T |
|
| Q |
118 |
atgactgctcgcctcctattgttcatcgtgatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaa |
217 |
Q |
| |
|
|||| || || ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15037850 |
atgattgttcccctcctattgttcatcgagatatatccagcaagaatgttattttggatatggaatatgtagctcatgtctcagactttggaacatctaa |
15037949 |
T |
|
| Q |
218 |
gtttctaaatcccaattcgtccaatatgacttcttttgcaggcacctttggatatgctgctccaggtcaattcc |
291 |
Q |
| |
|
||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15037950 |
gtttctaaatcccaactcatccaatatgtcttcttttgcaggcacctttggatatgctgctccaggtcaattcc |
15038023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 14532126 - 14531848
Alignment:
| Q |
18 |
gacaacattttgaaggacaatgaacaagctggtgaatttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| | |||||||||||||||||||| |||| |||||| |||| |
|
|
| T |
14532126 |
gacaacattttgaaggacaatgaacaagctgctgaatttgattggaataggagggtgaatgtcattaaagatatagctaatgctttatgctatctacatc |
14532027 |
T |
|
| Q |
118 |
atgactgctcgcctcctattgttcatcgtgatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaa |
217 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |
|
|
| T |
14532026 |
atgactgctcacctcctattgttcatcgagatatatccagcaagaatgttattttggatttggaatacgtagctcatgtctcagacttcggaacatccaa |
14531927 |
T |
|
| Q |
218 |
gtttctaaatcccaattcgtccaatatgacttcttttgcaggcacctttggatatgctgctccaggtcaattccttttc |
296 |
Q |
| |
|
|||||| |||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14531926 |
gtttctgaatcccaactcatccaatatgacttcttttgcaggcacctttggatatgcagctccaggtcaattccttttc |
14531848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 15041318 - 15041593
Alignment:
| Q |
18 |
gacaacattttgaaggacaatgaacaagctggtgaatttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | |||||||||||||||||||| |||| |||||| |||| |
|
|
| T |
15041318 |
gacaacattttgaaggacaatgaacaagctagtgaatttgattggaatagaagggtgaatgtcattaaagatatagctaatgctttatgctatctacatc |
15041417 |
T |
|
| Q |
118 |
atgactgctcgcctcctattgttcatcgtgatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaa |
217 |
Q |
| |
|
|||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15041418 |
atgattgttcccctcctattgttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaa |
15041517 |
T |
|
| Q |
218 |
gtttctaaatcccaattcgtccaatatgacttcttttgcag--gcacctttggatatgctgctccaggtcaattcc |
291 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| |||||| |
|
|
| T |
15041518 |
gtttttaaatcccaattcatccaatatgacttcttttgcaggcgcacctttggatatgctgcaccaggtgaattcc |
15041593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 15033183 - 15033460
Alignment:
| Q |
18 |
gacaacattttgaaggacaatgaacaagctggtgaatttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatc |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| || |||||||||||||||||||||| |||| |||| |||||| |
|
|
| T |
15033183 |
gacatcattttgaaggacaatgaacaagctcctgaatttgattggaataggagggtggatgttattaaagatatagctaatgctttatgctatatgcatc |
15033282 |
T |
|
| Q |
118 |
atgactgctcgcctcctattgttcatcgtgatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaa |
217 |
Q |
| |
|
|||| || || ||| | ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15033283 |
atgattgttcaccttcaattgttcatcgcgatatatccagcaagaatgtcattttggatttggaatatgtagctcatgtctcagactttggaacatctaa |
15033382 |
T |
|
| Q |
218 |
gtttctaaatcccaattcgtccaatatgacttcttttgcaggcacctttggatatgctgctccaggtcaattcctttt |
295 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| |||| |
|
|
| T |
15033383 |
gtttctcaatcccaattcatccaatatgacttcttttgcaggcacttttggatatactgctccaggtgaattcttttt |
15033460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 54 - 284
Target Start/End: Original strand, 14468570 - 14468803
Alignment:
| Q |
54 |
tttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgtgatatat |
153 |
Q |
| |
|
||||| ||||||| |||||||||| | ||||| ||| |||||||||| ||| ||| |||||||||| |||| || | ||||||||||| ||||||| |
|
|
| T |
14468570 |
tttgactggaataggagggtgaatgtcattaaggatgtagctaatgcactatactacatgcatcatgatcgctcaccatcaattgttcatcgcgatatat |
14468669 |
T |
|
| Q |
154 |
ccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtccaatatgacttc--- |
250 |
Q |
| |
|
|||| |||||| || ||||||||||||||||||| |||||||||||||| || |||||| |||||||||| ||||||||| | |||||| ||| || |
|
|
| T |
14468670 |
ccagtaagaatattgttttggatttggaatatgtggctcatgtctcagatttcggaacagctaagtttctcaatcccaatgcttccaattggacctctaa |
14468769 |
T |
|
| Q |
251 |
ttttgcaggcacctttggatatgctgctccaggt |
284 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||| |
|
|
| T |
14468770 |
ttttgtaggcacctttggatacactgctccaggt |
14468803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 54 - 289
Target Start/End: Original strand, 14504749 - 14504987
Alignment:
| Q |
54 |
tttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgtgatatat |
153 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||| |||| ||| |||||||||| |||| ||| | ||||||||||| ||||||| |
|
|
| T |
14504749 |
tttgattggaataagagggtgaaatccattaaagatgtagctaatgctttatactacatgcatcatgatcgctcacctgcaattgttcatcgcgatatat |
14504848 |
T |
|
| Q |
154 |
ccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtccaatatgacttct-- |
251 |
Q |
| |
|
| || |||||| || ||||||||||||||||||| ||||||||||| || || |||||| |||||||||| |||||| || | |||||| ||| ||| |
|
|
| T |
14504849 |
cgagtaagaatattgttttggatttggaatatgtggctcatgtctcggatttcggaacagctaagtttcttaatcccgatgcttccaattggacctctaa |
14504948 |
T |
|
| Q |
252 |
-tttgcaggcacctttggatatgctgctccaggtcaatt |
289 |
Q |
| |
|
|||| |||||| |||||||| ||||||||||| |||| |
|
|
| T |
14504949 |
ctttgtaggcacgtttggatacactgctccaggttaatt |
14504987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 60 - 284
Target Start/End: Original strand, 14483524 - 14483751
Alignment:
| Q |
60 |
tggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgtgatatatccagca |
159 |
Q |
| |
|
||||||| |||||||| | ||||||||| |||||||||| |||| ||| |||||||||| |||| ||| | || |||||||| ||||||||||| | |
|
|
| T |
14483524 |
tggaataggagggtgattgccattaaagatgtagctaatgctttatactacatgcatcatgatcgctcaccttcaatagttcatcgcgatatatccagta |
14483623 |
T |
|
| Q |
160 |
agaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtccaatatgacttc---ttttgc |
256 |
Q |
| |
|
||||| || ||||||||||||||||||| |||||||||||||| || |||||| |||||||||| |||||| || |||||| ||| || ||||| |
|
|
| T |
14483624 |
agaatattgttttggatttggaatatgtggctcatgtctcagatttcggaacagctaagtttcttaatcccgataattccaattggacctctaattttgt |
14483723 |
T |
|
| Q |
257 |
aggcacctttggatatgctgctccaggt |
284 |
Q |
| |
|
||||||||||||||| ||||||||||| |
|
|
| T |
14483724 |
aggcacctttggatacactgctccaggt |
14483751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 13520 - 13797
Alignment:
| Q |
19 |
acaacattttgaaggacaatgaacaagctggtgaatttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13520 |
acaacattttgaaggacaatgaacaagctgctgaatttgattggaataagagggtgaatatcattaaagatatagctaatgccttattctatctgcatca |
13619 |
T |
|
| Q |
119 |
tgactgctcgcctcctattgttcatcgtgatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaag |
218 |
Q |
| |
|
||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
13620 |
tgattgttcccctcctattgttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagacttcggaacatccaag |
13719 |
T |
|
| Q |
219 |
tttctaaatcccaattcgtccaatatgacttcttttgcaggcacctttggatatgctgctccaggtcaattccttttc |
296 |
Q |
| |
|
|| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13720 |
ttcctaaatcccaattcatccaacatgacttcttttgcaggcacctttggatatgcagctccaggtcaattccttttc |
13797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 58 - 296
Target Start/End: Original strand, 7259 - 7497
Alignment:
| Q |
58 |
attggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgtgatatatccag |
157 |
Q |
| |
|
||||||||| |||||| ||| ||||||| | |||||||||| |||| |||| ||||||| | ||||| ||| | ||||||||||||||||||||||| |
|
|
| T |
7259 |
attggaataggagggtaaatgccattaaaggtgtagctaatgctttatgctatatgcatcacaattgctcaccttcaattgttcatcgtgatatatccag |
7358 |
T |
|
| Q |
158 |
caagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtccaatatgacttcttttgca |
257 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| | |||||||| |||||| |||| |||||| ||| | ||||| | |
|
|
| T |
7359 |
caagaatgttgttttggatttggaatatgtggctcatgtctcagacttcggaacagccaagtttcttaatcccgattcttccaattggacctgttttgta |
7458 |
T |
|
| Q |
258 |
ggcacctttggatatgctgctccaggtcaattccttttc |
296 |
Q |
| |
|
|| |||||||||||||||||||||||| |||| |||||| |
|
|
| T |
7459 |
ggaacctttggatatgctgctccaggttaatttcttttc |
7497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 14163 - 14440
Alignment:
| Q |
19 |
acaacattttgaaggacaatgaacaagctggtgaatttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14163 |
acaacattttgaaggacaatgaacaagctgctgaatttgattggaataagagggtgaatatcattaaagatatagctaatgccttattctatctgcatca |
14262 |
T |
|
| Q |
119 |
tgactgctcgcctcctattgttcatcgtgatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaag |
218 |
Q |
| |
|
||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
14263 |
tgattgttcccctcctattgttcatcgagatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagacttcggaacatccaag |
14362 |
T |
|
| Q |
219 |
tttctaaatcccaattcgtccaatatgacttcttttgcaggcacctttggatatgctgctccaggtcaattccttttc |
296 |
Q |
| |
|
|| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14363 |
ttcctaaatcccaattcatccaacatgacttcttttgcaggcacctttggatatgcagctccaggtcaattccttttc |
14440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 58 - 296
Target Start/End: Original strand, 7903 - 8141
Alignment:
| Q |
58 |
attggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgtgatatatccag |
157 |
Q |
| |
|
||||||||| |||||| ||| ||||||| | |||||||||| |||| |||| ||||||| | ||||| ||| | ||||||||||||||||||||||| |
|
|
| T |
7903 |
attggaataggagggtaaatgccattaaaggtgtagctaatgctttatgctatatgcatcacaattgctcaccttcaattgttcatcgtgatatatccag |
8002 |
T |
|
| Q |
158 |
caagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtccaatatgacttcttttgca |
257 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| | |||||||| |||||| |||| |||||| ||| | ||||| | |
|
|
| T |
8003 |
caagaatgttgttttggatttggaatatgtggctcatgtctcagacttcggaacagccaagtttcttaatcccgattcttccaattggacctgttttgta |
8102 |
T |
|
| Q |
258 |
ggcacctttggatatgctgctccaggtcaattccttttc |
296 |
Q |
| |
|
|| |||||||||||||||||||||||| |||| |||||| |
|
|
| T |
8103 |
ggaacctttggatatgctgctccaggttaatttcttttc |
8141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 53 - 289
Target Start/End: Complemental strand, 15676423 - 15676187
Alignment:
| Q |
53 |
atttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgtgatata |
152 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| |||||||||| |||| |||| |||| ||||| ||||| ||||| ||||||||||| |||||| |
|
|
| T |
15676423 |
atttgattggaataagcgggtgaatgttattaaagatgtagctaatgctttatactatatgcaccatgattgctcacctccaattgttcatcgagatata |
15676324 |
T |
|
| Q |
153 |
tccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtccaatatgacttctt |
252 |
Q |
| |
|
|| ||||||||| | | ||||||| |||||||| |||| ||||||||||||||||| | ||||| |||||||||| ||||| |||| |||| || | |
|
|
| T |
15676323 |
tcaagcaagaatatcctactggatttagaatatgtggctcgtgtctcagactttggaatagctaagcttctaaatcctaattcaaccaacttgacatcat |
15676224 |
T |
|
| Q |
253 |
ttgcaggcacctttggatatgctgctccaggtcaatt |
289 |
Q |
| |
|
||||||| |||| ||||||||||||||||||| |||| |
|
|
| T |
15676223 |
ttgcaggtacctatggatatgctgctccaggttaatt |
15676187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 53 - 284
Target Start/End: Complemental strand, 15664588 - 15664357
Alignment:
| Q |
53 |
atttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgtgatata |
152 |
Q |
| |
|
||||| |||||| |||||||||||| |||||||||||||||| ||||| |||| |||| |||| ||||| ||| | ||||| ||||||||||| |||||| |
|
|
| T |
15664588 |
atttggttggaaaaagagggtgaatgttattaaagatatagcgaatgctttatgctatatgcaccatgattgcacccctccaattgttcatcgagatata |
15664489 |
T |
|
| Q |
153 |
tccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtccaatatgacttctt |
252 |
Q |
| |
|
|| ||||||||| || || ||||||| |||||||| ||| |||||||||||||||||| ||||| |||| ||||| ||||| |||| ||| || | |
|
|
| T |
15664488 |
tcaagcaagaatattcttctggatttagaatatgtggcttgtgtctcagactttggaacggctaagcttcttaatcctaattcagacaattggacctcat |
15664389 |
T |
|
| Q |
253 |
ttgcaggcacctttggatatgctgctccaggt |
284 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| |
|
|
| T |
15664388 |
ttgcaggcacctatggatatgcttctccaggt |
15664357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 284
Target Start/End: Original strand, 17849262 - 17849525
Alignment:
| Q |
21 |
aacattttgaaggacaatgaacaagctggtgaatttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatg |
120 |
Q |
| |
|
||||||||||| || |||| ||||| || |||||||||||||||| |||||||| | ||||||||| |||||||||| ||| ||| |||||||| |
|
|
| T |
17849262 |
aacattttgaaagatgatgatcaagcaattgcatttgattggaataagcgggtgaatgtcattaaagatgtagctaatgctctatgttatatgcatcatc |
17849361 |
T |
|
| Q |
121 |
actgctcgcctcctattgttcatcgtgatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtt |
220 |
Q |
| |
|
| ||||| ||||| ||||||||||| |||||||| ||||||||| | || | || ||||||||||||||||||||||| |||||||||| | |||| | |
|
|
| T |
17849362 |
attgctcacctccgattgttcatcgagatatatcaagcaagaatatacttctagacttggaatatgtagctcatgtctctgactttggaatagctaaact |
17849461 |
T |
|
| Q |
221 |
tctaaatcccaattcgtccaatatgacttcttttgcaggcacctttggatatgctgctccaggt |
284 |
Q |
| |
|
||||||||| |||| ||||| ||| || |||||||| ||| |||||||||||||||||||| |
|
|
| T |
17849462 |
tctaaatcctgattcaaccaattggacctcatttgcaggaaccattggatatgctgctccaggt |
17849525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 53 - 223
Target Start/End: Original strand, 14606670 - 14606840
Alignment:
| Q |
53 |
atttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgtgatata |
152 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||| |||| ||||| |||| ||| |||||||||| ||||||||||| ||||||||||| |||||| |
|
|
| T |
14606670 |
atttgattggaataagagggtgaatgtcattaaagatgtagccaatgctttatgctacatgcatcatgattgctcgcctccaattgttcatcgagatata |
14606769 |
T |
|
| Q |
153 |
tccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttct |
223 |
Q |
| |
|
|| ||||||||| || || |||||| ||||| ||| | ||||||||| |||||||||||| ||||| |||| |
|
|
| T |
14606770 |
tcaagcaagaatattcttctggattcggaatgtgtgggtcatgtctctgactttggaacagctaagcttct |
14606840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 53 - 223
Target Start/End: Original strand, 16025847 - 16026017
Alignment:
| Q |
53 |
atttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgtgatata |
152 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||| |||| ||||| |||| ||| |||||||||| ||||||||||| ||||||||||| |||||| |
|
|
| T |
16025847 |
atttgattggaataagagggtgaatgtcattaaagatgtagccaatgctttatgctacatgcatcatgattgctcgcctccaattgttcatcgagatata |
16025946 |
T |
|
| Q |
153 |
tccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttct |
223 |
Q |
| |
|
|| ||||||||| || || |||||| ||||| ||| | ||||||||| |||||||||||| ||||| |||| |
|
|
| T |
16025947 |
tcaagcaagaatattcttctggattcggaatgtgtgggtcatgtctctgactttggaacagctaagcttct |
16026017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 53 - 291
Target Start/End: Complemental strand, 17825444 - 17825206
Alignment:
| Q |
53 |
atttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgtgatata |
152 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||| ||| ||| |||||||| | ||||| ||||| ||||||||||| |||||| |
|
|
| T |
17825444 |
atttgactggaataagagggtgaatgccattaaagatatagctaatgctgtatgttatatgcatcatcattgctcacctccaattgttcatcgagatata |
17825345 |
T |
|
| Q |
153 |
tccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtccaatatgacttctt |
252 |
Q |
| |
|
|| ||||||||| | || | ||||||||||||| ||||||||||| |||||||||| | ||||| |||| ||||| |||| ||||| ||| || | |
|
|
| T |
17825344 |
tcaagcaagaatatacttctaaatttggaatatgtggctcatgtctctgactttggaatagctaagcttcttaatcctgattcaaccaattggacctcat |
17825245 |
T |
|
| Q |
253 |
ttgcaggcacctttggatatgctgctccaggtcaattcc |
291 |
Q |
| |
|
||||||| ||| ||||||||||||| |||||| |||||| |
|
|
| T |
17825244 |
ttgcaggaaccattggatatgctgcaccaggtaaattcc |
17825206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 53 - 289
Target Start/End: Original strand, 16173323 - 16173559
Alignment:
| Q |
53 |
atttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgtgatata |
152 |
Q |
| |
|
|||| ||||||| ||| |||||||| | ||||||||| |||||||||| |||| |||| |||| ||||| ||||||||||| ||||||||||| |||||| |
|
|
| T |
16173323 |
atttaattggaaaaagcgggtgaatgtcattaaagatgtagctaatgctttatgctatatgcaccatgattgctcgcctccaattgttcatcgagatata |
16173422 |
T |
|
| Q |
153 |
tccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtccaatatgacttctt |
252 |
Q |
| |
|
|| ||||||||| || || |||||| |||| ||| ||||||||||| |||||||||||| ||||| |||| |||| |||| | |||||| | |
|
|
| T |
16173423 |
tcaagcaagaatattcttctggattccgaatgtgtggctcatgtctctgactttggaacagctaagcttcttgatcctaatttaacttcctcgacttcat |
16173522 |
T |
|
| Q |
253 |
ttgcaggcacctttggatatgctgctccaggtcaatt |
289 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| |||| |
|
|
| T |
16173523 |
ttgcatgcacatttggatatgctgctccaggttaatt |
16173559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 16103656 - 16103825
Alignment:
| Q |
54 |
tttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgtgatatat |
153 |
Q |
| |
|
||||||||||| ||||| |||||| | |||||||| |||||||||| |||| ||| |||||||||| ||||||||||| |||||||| | ||||||| |
|
|
| T |
16103656 |
tttgattggaacaagagagtgaatgtccttaaagatgtagctaatgctttatgctacatgcatcatgattgctcgcctccaattgttcacagagatatat |
16103755 |
T |
|
| Q |
154 |
ccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttct |
223 |
Q |
| |
|
| ||||||||| || || ||||||| |||||||| |||| |||||| |||||||||||| ||||| |||| |
|
|
| T |
16103756 |
caagcaagaatattcttctggatttagaatatgtggctcgtgtctcggactttggaacagctaagcttct |
16103825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 223
Target Start/End: Original strand, 31103397 - 31103567
Alignment:
| Q |
53 |
atttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgtgatata |
152 |
Q |
| |
|
|||||||||| | |||||||||||| || |||||| | | || ||||| || | ||| |||||||||| ||||| ||||||||| |||||||||||||| |
|
|
| T |
31103397 |
atttgattgggaaaagagggtgaatgttgttaaaggtgtcgccaatgctttgtcctacttgcatcatgattgctcacctcctattattcatcgtgatata |
31103496 |
T |
|
| Q |
153 |
tccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttct |
223 |
Q |
| |
|
|| ||||||||| || || | || | || |||| |||||||||||| |||||||| ||| |||||||||| |
|
|
| T |
31103497 |
tcgagcaagaatattcttctcaatcttgactatgaagctcatgtctccgactttgggacagctaagtttct |
31103567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 53 - 226
Target Start/End: Original strand, 31159588 - 31159761
Alignment:
| Q |
53 |
atttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgtgatata |
152 |
Q |
| |
|
|||||||||| | |||||||||||| || |||||| | | || ||||| || | ||| |||||||||| || || |||||||||||||||||||||||| |
|
|
| T |
31159588 |
atttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattgttctcctcctattgttcatcgtgatata |
31159687 |
T |
|
| Q |
153 |
tccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaa |
226 |
Q |
| |
|
|| ||||||||||| || | || | || |||| |||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
31159688 |
tcgagcaagaatgtccttcttaatcttgactatgaagctcaagtctccgactttggaacggctaagtttctaaa |
31159761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 53 - 226
Target Start/End: Original strand, 31241691 - 31241864
Alignment:
| Q |
53 |
atttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgtgatata |
152 |
Q |
| |
|
|||||||||| | |||||||||||| || |||||| | | || ||||| || | ||| |||||||||| || || |||||||||||||||||||||||| |
|
|
| T |
31241691 |
atttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattgttctcctcctattgttcatcgtgatata |
31241790 |
T |
|
| Q |
153 |
tccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaa |
226 |
Q |
| |
|
|| ||||||||||| || | || | || |||| |||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
31241791 |
tcgagcaagaatgtccttcttaatcttgactatgaagctcaagtctccgactttggaacggctaagtttctaaa |
31241864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 53 - 226
Target Start/End: Original strand, 31140756 - 31140929
Alignment:
| Q |
53 |
atttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgtgatata |
152 |
Q |
| |
|
|||||||||| | |||||||||||| || |||||| | | || ||||| || | ||| |||||||||| || || ||||||||| |||||||||||||| |
|
|
| T |
31140756 |
atttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattgttctcctcctattattcatcgtgatata |
31140855 |
T |
|
| Q |
153 |
tccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaa |
226 |
Q |
| |
|
|| ||||||||||| || | || | || |||| |||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
31140856 |
tcaagcaagaatgtccttcttaatcttgactatgaagctcaagtctccgactttggaacggctaagtttctaaa |
31140929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 53 - 226
Target Start/End: Original strand, 31058953 - 31059126
Alignment:
| Q |
53 |
atttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgtgatata |
152 |
Q |
| |
|
|||||||||| | |||||||||||| || |||||| | | || ||||| || | ||| |||||||||| |||||||||||||| ||||||| |||||| |
|
|
| T |
31058953 |
atttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattgctcgcctcctataattcatcgcgatata |
31059052 |
T |
|
| Q |
153 |
tccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaa |
226 |
Q |
| |
|
|| |||||||||||| || | || | || |||| ||||||||| || ||||| || ||| |||||||| |||| |
|
|
| T |
31059053 |
tcaagcaagaatgttcttcttaatcttgactatgaagctcatgtttccgacttcgggacagctaagtttttaaa |
31059126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 53 - 226
Target Start/End: Original strand, 31184477 - 31184650
Alignment:
| Q |
53 |
atttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgtgatata |
152 |
Q |
| |
|
|||||||||| | |||||||||||| || |||||| | | || ||||| || | ||| ||||||| || ||||| |||||||||||||||||||||||| |
|
|
| T |
31184477 |
atttgattgggaaaagagggtgaatgttgttaaaggtgtcgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttcatcgtgatata |
31184576 |
T |
|
| Q |
153 |
tccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaa |
226 |
Q |
| |
|
|| || || |||||| || | || | || |||| |||||||||||| ||||| || | ||||||||||||| |
|
|
| T |
31184577 |
tcgagtaaaaatgttcttatcaatcttgactatgaagctcatgtctccgacttcgggatcgctaagtttctaaa |
31184650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 226
Target Start/End: Original strand, 31216187 - 31216360
Alignment:
| Q |
53 |
atttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgtgatata |
152 |
Q |
| |
|
|||||||||| | ||||||||||||||| ||| || | | ||| |||| || | ||| |||||||||||||| ||||| || ||||| ||||| ||| |
|
|
| T |
31216187 |
atttgattgggaaaagagggtgaatattgttagaggtgtggctgatgctttgtcctacatgcatcatgactgcatacctccaatagttcaccgtgacata |
31216286 |
T |
|
| Q |
153 |
tccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaa |
226 |
Q |
| |
|
|| |||||||||||| | |||||| | ||||| |||||| | ||||| ||||||||| | ||||||||||| |
|
|
| T |
31216287 |
tcaagcaagaatgttctcttggatatatcatatgaagctcaactttcagattttggaacagccaagtttctaaa |
31216360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 53 - 281
Target Start/End: Complemental strand, 13747 - 13519
Alignment:
| Q |
53 |
atttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgtgatata |
152 |
Q |
| |
|
||||| |||||| |||||||||||| |||||||||||||||| ||||| |||| |||| |||| ||||| ||| | ||||| ||||||||||| |||||| |
|
|
| T |
13747 |
atttggttggaaaaagagggtgaatgttattaaagatatagcgaatgctttatgctatatgcaccatgattgcacccctccaattgttcatcgagatata |
13648 |
T |
|
| Q |
153 |
tccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcgtccaatatgacttctt |
252 |
Q |
| |
|
|| ||||||||| || || ||||||| |||||||| |||| |||||| |||||||||||| ||||| |||| || | ||||| |||| ||| || | |
|
|
| T |
13647 |
tcaagcaagaatattcttctggatttagaatatgtggctcgtgtctcggactttggaacagctaagcttcttgatgctaattcagacaattggacctcat |
13548 |
T |
|
| Q |
253 |
ttgcaggcacctttggatatgctgctcca |
281 |
Q |
| |
|
|||||||||||| |||||||||||||||| |
|
|
| T |
13547 |
ttgcaggcacctatggatatgctgctcca |
13519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 53 - 187
Target Start/End: Complemental strand, 4914 - 4780
Alignment:
| Q |
53 |
atttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgtgatata |
152 |
Q |
| |
|
||||| |||||| |||||||||||| |||||||||||||||| ||||| |||| |||| |||| ||||| ||| | ||||| ||||||||||| |||||| |
|
|
| T |
4914 |
atttggttggaaaaagagggtgaatgttattaaagatatagcgaatgctttatgctatatgcaccatgattgcacccctccaattgttcatcgagatata |
4815 |
T |
|
| Q |
153 |
tccagcaagaatgttattttggatttggaatatgt |
187 |
Q |
| |
|
|| ||||||||| || || ||||||| |||||||| |
|
|
| T |
4814 |
tcaagcaagaatattcttctggatttagaatatgt |
4780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 112 - 284
Target Start/End: Original strand, 17028665 - 17028837
Alignment:
| Q |
112 |
tgcatcatgactgctcgcctcctattgttcatcgtgatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaac |
211 |
Q |
| |
|
||||| |||| ||||| ||| | ||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
17028665 |
tgcatgatgattgctcaccttcaattgttcatcgtgatatatccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaac |
17028764 |
T |
|
| Q |
212 |
atctaagtttctaaatcccaattcgtccaatatgacttcttttgcaggcacctttggatatgctgctccaggt |
284 |
Q |
| |
|
| |||||||||| |||| | |||| |||||| ||| |||||| ||||||||||||||| ||||||||||| |
|
|
| T |
17028765 |
agctaagtttcttaatctcgattcttccaattggaccgcttttgtaggcacctttggatacactgctccaggt |
17028837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 112 - 284
Target Start/End: Original strand, 17559101 - 17559273
Alignment:
| Q |
112 |
tgcatcatgactgctcgcctcctattgttcatcgtgatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaac |
211 |
Q |
| |
|
||||| |||| ||||| ||| | ||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
17559101 |
tgcatgatgattgctcaccttcaattgttcatcgtgatatatccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaac |
17559200 |
T |
|
| Q |
212 |
atctaagtttctaaatcccaattcgtccaatatgacttcttttgcaggcacctttggatatgctgctccaggt |
284 |
Q |
| |
|
| |||||||||| |||| | |||| |||||| ||| |||||| ||||||||||||||| ||||||||||| |
|
|
| T |
17559201 |
agctaagtttcttaatctcgattcttccaattggaccgcttttgtaggcacctttggatacactgctccaggt |
17559273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 228
Target Start/End: Original strand, 37027592 - 37027708
Alignment:
| Q |
112 |
tgcatcatgactgctcgcctcctattgttcatcgtgatatatccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaac |
211 |
Q |
| |
|
||||||||| ||| | ||||||||||||||||| || ||||| ||||| |||||| |||| |||||||| | || |||| | |||||||||||||||| |
|
|
| T |
37027592 |
tgcatcatggttgcgctcctcctattgttcatcgcgacatatcgagcaaaaatgttcttttagatttggattgtgaagcttacatctcagactttggaac |
37027691 |
T |
|
| Q |
212 |
atctaagtttctaaatc |
228 |
Q |
| |
|
| ||||| |||| |||| |
|
|
| T |
37027692 |
agctaagattctgaatc |
37027708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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