View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7996_low_14 (Length: 382)
Name: NF7996_low_14
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7996_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 24 - 369
Target Start/End: Original strand, 45746418 - 45746763
Alignment:
| Q |
24 |
ggattcaccattgcttctttcatcatgctattctcccctcttagcttgtcattttcctgcctaagcattatgttctcatgcctttccagttgagtctgat |
123 |
Q |
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| T |
45746418 |
ggattcaccattgcttctttcatcatgctattctcccctcttagcttgtcattttcctgcctaagcattatgttctcatgcctttccagttgagtctgat |
45746517 |
T |
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| Q |
124 |
tcaacaaaaacaaagtcagttaattgttacaaattacagtatctatattaatacaaatgcaataactgttgtgtttaacaagtttttaaatcaaatttgt |
223 |
Q |
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| T |
45746518 |
tcaacaaaaacaaagtcagttaattgttacaaattacagtatctatattaatacaaatgcaataactgttgtgtttaacaagtttttaaatcacatttgt |
45746617 |
T |
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| Q |
224 |
aatctttgatattatggagaatcacaaacaaaagcagcttaggcaaccttgttgtggagacattaaaaaccttaatgccacaactcagatcgcgagtgca |
323 |
Q |
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| T |
45746618 |
aatctttgatattatggagaatcacaaacaaaagcggcttaggcaaccttgttgtggagacattaaaaaccttaatgccgcaactcagatcgcgactgca |
45746717 |
T |
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| Q |
324 |
gatttttaaaagaaaatggaacatgatatttaacattcaccttcat |
369 |
Q |
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| T |
45746718 |
gatttttaaaagaaaatggaacatgatatttaacattcaccttcat |
45746763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 12326862 - 12326930
Alignment:
| Q |
52 |
tattctcccctcttagcttgtcattttcctgcctaagcattatgttctcatgcctttccagttgagtct |
120 |
Q |
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| T |
12326862 |
tattctcagctctaagcttatcattctcttgcctaagcaaattgttctcatgcctttccaattgagtct |
12326930 |
T |
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