View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7996_low_15 (Length: 374)
Name: NF7996_low_15
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7996_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 363
Target Start/End: Original strand, 465331 - 465677
Alignment:
| Q |
17 |
aatatgaaaagagaagatctcgttattaacaaaaccaaaaaagataaaccttctgatcagatctatgtcttcttccctgaagaagccaaagtcggtgtga |
116 |
Q |
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| T |
465331 |
aatatgaaaagagaagatctcgttattaacaaaaccaaaaaagataaaccttctgatcagatctatgtcttcttccctgaagaagccaaagtcggtgtga |
465430 |
T |
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| Q |
117 |
aaacaatgaagacctacaccaaccgaatgaattctgagaatgtttatagagctattcttgtttgtcaaaccagtcttactccctttgccaaaacttgtgt |
216 |
Q |
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| T |
465431 |
aaacaatgaagacctacaccaaccgaatgaattctgagaatgtttatagagctattcttgtttgtcaaaccagtcttactccctttgccaaaacttgtgt |
465530 |
T |
|
| Q |
217 |
ttctgaaattgcttccaaatttcacttggaagtttttcaggtannnnnnnngtagttttataaaccctaatttgagaaaatgagttaattgaatgtaatt |
316 |
Q |
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| T |
465531 |
ttctgaaattgcttccaaatttcacttggaagtttttcaggtattttttttgtagttttataaaccctaatttgagaaaatgagttaattgaatgtaatt |
465630 |
T |
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| Q |
317 |
atgtgtccgtgtcagtgtacgtctaatccgagtggtgtccgtgtgtg |
363 |
Q |
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| T |
465631 |
atgtgtccgtgtcagtgtgcgtctaatccgagaggtgtctgtgtgtg |
465677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 315
Target Start/End: Original strand, 29127665 - 29127696
Alignment:
| Q |
284 |
taatttgagaaaatgagttaattgaatgtaat |
315 |
Q |
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| T |
29127665 |
taatttgagaaaatgagttaattgaatgtaat |
29127696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 322
Target Start/End: Complemental strand, 4769356 - 4769318
Alignment:
| Q |
284 |
taatttgagaaaatgagttaattgaatgtaattatgtgt |
322 |
Q |
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| T |
4769356 |
taatttgagaaaatgagttaattgaatgtattcatgtgt |
4769318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 312
Target Start/End: Complemental strand, 50529749 - 50529721
Alignment:
| Q |
284 |
taatttgagaaaatgagttaattgaatgt |
312 |
Q |
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| T |
50529749 |
taatttgagaaaatgagttaattgaatgt |
50529721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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