View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7996_low_19 (Length: 327)
Name: NF7996_low_19
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7996_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 27 - 312
Target Start/End: Complemental strand, 46532385 - 46532100
Alignment:
| Q |
27 |
cagagatggaaggaatagaacacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttca |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46532385 |
cagagatggaaggaatagaacacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttca |
46532286 |
T |
|
| Q |
127 |
tggcttcccagaactctggtattcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgac |
226 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46532285 |
tggcttcccagaactctggtattcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgac |
46532186 |
T |
|
| Q |
227 |
actgaggctccatcttcaataagcagctacactggttttcacattgtaggtgaccttgttgcacttatagatttgcttggtgttga |
312 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46532185 |
accgaggctccatcttcaataagcagctacactggttttcacattgtaggtgaccttgttgcacttatagatttgcttggtgttga |
46532100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 30 - 313
Target Start/End: Complemental strand, 46524829 - 46524546
Alignment:
| Q |
30 |
agatggaaggaatagaacacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatgg |
129 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
46524829 |
agatggaaggaatagaacacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgtcttgttccttcatgg |
46524730 |
T |
|
| Q |
130 |
cttcccagaactctggtattcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacact |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||| || |||||||| ||||| ||||||||||||||||| |
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| T |
46524729 |
cttcccagaactctggtattcatggcgccaccagattgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacacc |
46524630 |
T |
|
| Q |
230 |
gaggctccatcttcaataagcagctacactggttttcacattgtaggtgaccttgttgcacttatagatttgcttggtgttgat |
313 |
Q |
| |
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|| ||||| |||||| | || |||||||| ||||||||||| |||||||| |||||||||||||||||||| || ||||||||| |
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| T |
46524629 |
gatgctccgtcttcagttagtagctacacaggttttcacatagtaggtgatcttgttgcacttatagattttctgggtgttgat |
46524546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 28 - 313
Target Start/End: Original strand, 46322728 - 46323013
Alignment:
| Q |
28 |
agagatggaaggaatagaacacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcat |
127 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |
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| T |
46322728 |
agagatggaaggaatagagcacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcac |
46322827 |
T |
|
| Q |
128 |
ggcttcccagaactctggtattcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgaca |
227 |
Q |
| |
|
||||| || ||||||||||| || ||||||||||| |||| ||||| ||||| ||||| ||||||||||| ||||| ||||| |||||||||||||||| |
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| T |
46322828 |
ggctttcctgaactctggtactcttggcgccaccagattgcggctctcggctctctcggctaccgcgccgtagctccggatctacgtggctatggtgaca |
46322927 |
T |
|
| Q |
228 |
ctgaggctccatcttcaataagcagctacactggttttcacattgtaggtgaccttgttgcacttatagatttgcttggtgttgat |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |||||| |
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| T |
46322928 |
ctgaggctccatcttcaataagcagctacacaggttttcacattgtaggtgatctggttgcacttatagatttgcttggcgttgat |
46323013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 28 - 258
Target Start/End: Complemental strand, 46479335 - 46479105
Alignment:
| Q |
28 |
agagatggaaggaatagaacacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcat |
127 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| || |||||||||||||| || ||||| ||||||||||| |
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| T |
46479335 |
agagatggaaggaatagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcac |
46479236 |
T |
|
| Q |
128 |
ggcttcccagaactctggtattcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgaca |
227 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| || |||||||||||||| |||||||| || |||| |
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| T |
46479235 |
ggcttccctgaactctggtattcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgaca |
46479136 |
T |
|
| Q |
228 |
ctgaggctccatcttcaataagcagctacac |
258 |
Q |
| |
|
| || ||||| ||||||||||||||||||| |
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| T |
46479135 |
ccgatgctcccgcttcaataagcagctacac |
46479105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 31 - 258
Target Start/End: Complemental strand, 46520762 - 46520535
Alignment:
| Q |
31 |
gatggaaggaatagaacacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggc |
130 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| || |||||||||||||| || ||||| ||||||||||| ||| |
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|
| T |
46520762 |
gatggaaggaatagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggc |
46520663 |
T |
|
| Q |
131 |
ttcccagaactctggtattcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacactg |
230 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| || |||||||||||||| |||||||| || ||||| | |
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|
| T |
46520662 |
ttccctgaactctggtattcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccg |
46520563 |
T |
|
| Q |
231 |
aggctccatcttcaataagcagctacac |
258 |
Q |
| |
|
| ||||| ||||||||||||||||||| |
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|
| T |
46520562 |
atgctcccgcttcaataagcagctacac |
46520535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 28 - 309
Target Start/End: Original strand, 46326433 - 46326714
Alignment:
| Q |
28 |
agagatggaaggaatagaacacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcat |
127 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |
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|
| T |
46326433 |
agagatggaaagaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcac |
46326532 |
T |
|
| Q |
128 |
ggcttcccagaactctggtattcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgaca |
227 |
Q |
| |
|
||||| || ||||||||||| || ||||||||||| |||| ||||| || |||||||||||||| || |||||||| ||||| |||||||||||||||| |
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|
| T |
46326533 |
ggctttcctgaactctggtactcttggcgccaccagattgcggctctcggatccctcggttaccgtgctgttgctcccgatctccgtggctatggtgaca |
46326632 |
T |
|
| Q |
228 |
ctgaggctccatcttcaataagcagctacactggttttcacattgtaggtgaccttgttgcacttatagatttgcttggtgt |
309 |
Q |
| |
|
| || | ||| ||||| || ||||||||||| |||||||| | || |||||| ||||| | || || || ||||||||||| |
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|
| T |
46326633 |
cagatgttccgtcttccattagcagctacacatgttttcacgtagttggtgacattgtttctctcatcgacttgcttggtgt |
46326714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 40 - 237
Target Start/End: Complemental strand, 46490525 - 46490328
Alignment:
| Q |
40 |
aatagaacacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaa |
139 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| |||||| ||||||||||||||||||| ||| |
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|
| T |
46490525 |
aatagaacacagaacagtggaagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaa |
46490426 |
T |
|
| Q |
140 |
ctctggtattcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacactgaggctcc |
237 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| || ||||| |
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|
| T |
46490425 |
ctctggtattcatggcgccaccagatttctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctcc |
46490328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 46494835 - 46494632
Alignment:
| Q |
28 |
agagatggaaggaatagaacacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcat |
127 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
46494835 |
agagatggaaggaatagagcacagaacagtggaagtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcctgttccttcac |
46494736 |
T |
|
| Q |
128 |
ggcttcccagaactctggtattcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgaca |
227 |
Q |
| |
|
|| ||||| ||||||||||| || ||||||||||| |||| ||||| ||||| ||||||||||| || || ||||| ||||| ||||| ||||| || | |
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|
| T |
46494735 |
ggattccctgaactctggtactcttggcgccaccagattgcggctctcggctctctcggttaccgggctgtggctcccgatcttcgtggttatggcgata |
46494636 |
T |
|
| Q |
228 |
ctga |
231 |
Q |
| |
|
|||| |
|
|
| T |
46494635 |
ctga |
46494632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 46517122 - 46516894
Alignment:
| Q |
30 |
agatggaaggaatagaacacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatgg |
129 |
Q |
| |
|
||||||||||| |||| |||||||||||||| ||||||||||||||||||||| | || || ||||||||||||||||| | || |||||||||||||| |
|
|
| T |
46517122 |
agatggaaggagtagagcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatgg |
46517023 |
T |
|
| Q |
130 |
cttcccagaactctggtattcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacact |
229 |
Q |
| |
|
|| || ||| ||||||| |||||||||||||| ||||| ||||| ||||||| || |||||| |||| ||||||||||| ||||||| ||||||||| |
|
|
| T |
46517022 |
ttttcctgaaatctggtactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctctgtggctacggtgacact |
46516923 |
T |
|
| Q |
230 |
gaggctccatcttcaataagcagctacac |
258 |
Q |
| |
|
|| ||||| ||||| | || |||||||| |
|
|
| T |
46516922 |
gatgctcccacttcagttagtagctacac |
46516894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 149 - 313
Target Start/End: Original strand, 7475308 - 7475472
Alignment:
| Q |
149 |
tcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacactgaggctccatcttcaataa |
248 |
Q |
| |
|
|||||||||||||| ||| ||||||| |||||||||| |||| | ||| ||| | ||||| ||||||||||||||||| || ||||||||||||||| |
|
|
| T |
7475308 |
tcatggcgccaccagattatagctctcagctccctcggctaccatgtcgtggctactgatctccgtggctatggtgacaccgattctccatcttcaataa |
7475407 |
T |
|
| Q |
249 |
gcagctacactggttttcacattgtaggtgaccttgttgcacttatagatttgcttggtgttgat |
313 |
Q |
| |
|
|||||||||| || ||||| || || |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7475408 |
gcagctacacagggtttcatatggttggtgaccttgttgcacttatagattttcttggtgttgat |
7475472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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